@inproceedings{bb201600, AUTHOR = "Thirusittampalam, K. and Hossain, M.J. and Ghita, O. and Whelan, P.F.", TITLE = "Cellular Tracking in Time-Lapse Phase Contrast Images", BOOKTITLE = IMVIP09, YEAR = "2009", PAGES = "77-82", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851tr1.html#TT196806"} @inproceedings{bb201601, AUTHOR = "Mohamed, R. and El Baz, A. and Navalta, J.", TITLE = "Assessment of exercise-induced immune cell apoptosis using morphological image processing", BOOKTITLE = ICIP09, YEAR = "2009", PAGES = "2649-2652", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851tr1.html#TT196807"} @inproceedings{bb201602, AUTHOR = "Quelhas, P. and Mendonca, A.M. and Campilho, A.", TITLE = "Optical Flow Based Arabidopsis Thaliana Root Meristem Cell Division Detection", BOOKTITLE = ICIAR10, YEAR = "2010", PAGES = "II: 217-226", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851tr1.html#TT196808"} @inproceedings{bb201603, AUTHOR = "Marcuzzo, M. and Guichard, T. and Quelhas, P. and Mendonca, A.M. and Campilho, A.", TITLE = "Cell Division Detection on the Arabidopsis Thaliana Root", BOOKTITLE = IbPRIA09, YEAR = "2009", PAGES = "168-175", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851tr1.html#TT196809"} @inproceedings{bb201604, AUTHOR = "Marcuzzo, M. and Quelhas, P. and Campilho, A. and Mendonca, A.M. and Campilho, A.", TITLE = "A Hybrid Approach for Arabidopsis Root Cell Image Segmentation", BOOKTITLE = ICIAR08, YEAR = "2008", PAGES = "xx-yy", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851tr1.html#TT196810"} @inproceedings{bb201605, AUTHOR = "Marcuzzo, M. and Quelhas, P. and Mendonca, A.M. and Campilho, A.", TITLE = "Tracking of Arabidopsis thaliana root cells in time-lapse microscopy", BOOKTITLE = ICPR08, YEAR = "2008", PAGES = "1-4", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851tr1.html#TT196811"} @inproceedings{bb201606, AUTHOR = "Sanchez, L. and Gonzalez, V. and Alegre, E. and Alaiz, R.", TITLE = "Classification and Quantification Based on Image Analysis for Sperm Samples with Uncertain Damaged/Intact Cell Proportions", BOOKTITLE = ICIAR08, YEAR = "2008", PAGES = "xx-yy", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851tr1.html#TT196812"} @inproceedings{bb201607, AUTHOR = "Garcia, B. and Campilho, A. and Scheres, B. and Campilho, A.", TITLE = "Automatic Tracking of Arabidopsis thaliana Root Meristem in Confocal Microscopy", BOOKTITLE = ICIAR04, YEAR = "2004", PAGES = "II: 166-174", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851tr1.html#TT196813"} @inproceedings{bb201608, AUTHOR = "Nguyen, N. and Keller, S. and Huynh, T. and Shin, M.", TITLE = "Tracking colliding cells", BOOKTITLE = WACV09, YEAR = "2009", PAGES = "1-7", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851tr1.html#TT196814"} @inproceedings{bb201609, AUTHOR = "Russell, C. and Metaxas, D.N. and Restif, C. and Torr, P.H.S.", TITLE = "Using the Pn Potts model with learning methods to segment live cell images", BOOKTITLE = MMBIA07, YEAR = "2007", PAGES = "1-8", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851tr1.html#TT196815"} @inproceedings{bb201610, AUTHOR = "Nath, S.K. and Bunyak, F. and Palaniappan, K.", TITLE = "Robust Tracking of Migrating Cells Using Four-Color Level Set Segmentation", BOOKTITLE = ACIVS06, YEAR = "2006", PAGES = "920-932", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851tr1.html#TT196816"} @inproceedings{bb201611, AUTHOR = "Li, K. and Miller, E.D. and Weiss, L.E. and Campbell, P.G. and Kanade, T.", TITLE = "Online Tracking of Migrating and Proliferating Cells Imaged with Phase-Contrast Microscopy", BOOKTITLE = MMBIA06, YEAR = "2006", PAGES = "65", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851tr1.html#TT196817"} @inproceedings{bb201612, AUTHOR = "Yang, G. and Matov, A. and Danuser, G.", TITLE = "Reliable Tracking of Large Scale Dense Antiparallel Particle Motion for Fluorescence Live Cell Imaging", BOOKTITLE = "BioInfo05", YEAR = "2005", PAGES = "III: 138-138", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851tr1.html#TT196818"} @inproceedings{bb201613, AUTHOR = "Kanade, T. and Li, K.", TITLE = "Tracking of Migrating and Proliferating Cells in Phase-Contrast Microscopy Imagery for Tissue Engineering", BOOKTITLE = CVBIA05, YEAR = "2005", PAGES = "24-24", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851tr1.html#TT196819"} @inproceedings{bb201614, AUTHOR = "Ray, N. and Dong, G. and Acton, S.T.", TITLE = "Tracking Multiple Cells by Correspondence Resolution in a Sequential Bayesian Framework", BOOKTITLE = ICIP05, YEAR = "2005", PAGES = "I: 705-708", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851tr1.html#TT196820"} @article{bb201615, AUTHOR = "Berkes, P. and Wiskott, L.", TITLE = "Applying slow feature analysis to image sequences yields a rich repertoire of complex cell properties", JOURNAL = "ICANN02", PAGES = "81-86", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851tr1.html#TT196821"} @inproceedings{bb201616, AUTHOR = "McNally, J.G.", TITLE = "Computational optical-sectioning microscopy for 3D quantification of cell motion: results and challenges", BOOKTITLE = ICIP94, YEAR = "1994", PAGES = "III: 528-532", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851tr1.html#TT196822"} @article{bb201617, AUTHOR = "Belson, M. and Dudley, A.W. and Ledley, R.S.", TITLE = "Automatic Computer Measurements of Neurons", JOURNAL = PR, VOLUME = "1", YEAR = "1968", NUMBER = "2", MONTH = "November", PAGES = "119-128", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT196823"} @article{bb201618, AUTHOR = "Li, Z.N. and Uhr, L.", TITLE = "A pyramidal approach for the recognition of neurons using key features", JOURNAL = PR, VOLUME = "19", YEAR = "1986", NUMBER = "1", PAGES = "55-62", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT196824"} @article{bb201619, AUTHOR = "Fok, Y.L. and Chan, J.C.K. and Chin, R.T.", TITLE = "Automated analysis of nerve-cell images using active contour models", JOURNAL = MedImg, VOLUME = "15", YEAR = "1996", NUMBER = "3", MONTH = "June", PAGES = "353-368", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT196825"} @article{bb201620, AUTHOR = "Phillips, J.W. and Leahy, R.M. and Mosher, J.C.", TITLE = "MEG-based imaging of focal neuronal current sources", JOURNAL = MedImg, VOLUME = "16", YEAR = "1997", NUMBER = "3", MONTH = "June", PAGES = "338-348", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT196826"} @article{bb201621, AUTHOR = "Dima, A. and Scholz, M. and Obermayer, K.", TITLE = "Automatic segmentation and skeletonization of neurons from confocal microscopy images based on the 3-d wavelet transform", JOURNAL = IP, VOLUME = "11", YEAR = "2002", NUMBER = "7", MONTH = "July", PAGES = "790-801", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT196827"} @article{bb201622, AUTHOR = "Ruthazer, E.S. and Cline, H.T.", TITLE = "Multiphoton Imaging of Neurons in Living Tissue: Acquisition and Analysis of Time-Lapse Morphological Data", JOURNAL = RealTimeImg, VOLUME = "8", YEAR = "2002", NUMBER = "3", MONTH = "June", PAGES = "175-188", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT196828"} @article{bb201623, AUTHOR = "Ortiz, F. and Torres, F. and de Juan, E. and Cuenca, N.", TITLE = "Colour Mathematical Morphology for Neural Image Analysis", JOURNAL = RealTimeImg, VOLUME = "8", YEAR = "2002", NUMBER = "6", MONTH = "December", PAGES = "455-465", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT196829"} @article{bb201624, AUTHOR = "Fudenberg, G. and Paninski, L.", TITLE = "Bayesian Image Recovery for Dendritic Structures Under Low Signal-to-Noise Conditions", JOURNAL = IP, VOLUME = "18", YEAR = "2009", NUMBER = "3", MONTH = "March", PAGES = "471-482", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT196830"} @article{bb201625, AUTHOR = "Li, Q. and Deng, Z. and Zhang, Y. and Zhou, X. and Valentin Nagerl, U. and Wong, S.T.C.", TITLE = "A Global Spatial Similarity Optimization Scheme to Track Large Numbers of Dendritic Spines in Time-Lapse Confocal Microscopy", JOURNAL = MedImg, VOLUME = "30", YEAR = "2011", NUMBER = "3", MONTH = "March", PAGES = "632-641", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT196831"} @article{bb201626, AUTHOR = "Salimi Khorshidi, G. and Nichols, T.E. and Smith, S.M. and Woolrich, M.W.", TITLE = "Using Gaussian-Process Regression for Meta-Analytic Neuroimaging Inference Based on Sparse Observations", JOURNAL = MedImg, VOLUME = "30", YEAR = "2011", NUMBER = "7", MONTH = "July", PAGES = "1401-1416", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT196832"} @article{bb201627, AUTHOR = "Akselrod Ballin, A. and Bock, D. and Reid, R.C. and Warfield, S.K.", TITLE = "Accelerating Image Registration With the Johnson-Lindenstrauss Lemma: Application to Imaging 3-D Neural Ultrastructure With Electron Microscopy", JOURNAL = MedImg, VOLUME = "30", YEAR = "2011", NUMBER = "7", MONTH = "July", PAGES = "1427-1438", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT196833"} @article{bb201628, AUTHOR = "Li, Q. and Deng, Z.", TITLE = "A Surface-Based 3-D Dendritic Spine Detection Approach From Confocal Microscopy Images", JOURNAL = IP, VOLUME = "21", YEAR = "2012", NUMBER = "3", MONTH = "March", PAGES = "1223-1230", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT196834"} @article{bb201629, AUTHOR = "Pereira, F. and Botvinick, M. and Detre, G.", TITLE = "Using Wikipedia to learn semantic feature representations of concrete concepts in neuroimaging experiments", JOURNAL = AI, VOLUME = "194", YEAR = "2013", NUMBER = "1", MONTH = "January", PAGES = "240-252", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT196835"} @article{bb201630, AUTHOR = "Zhang, M. and Sakaie, K.E. and Jones, S.E.", TITLE = "Logical Foundations and Fast Implementation of Probabilistic Tractography", JOURNAL = MedImg, VOLUME = "32", YEAR = "2013", NUMBER = "8", PAGES = "1397-1410", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT196836"} @inproceedings{bb201631, AUTHOR = "Zhang, M. and Sakaie, K.E. and Jones, S.E.", TITLE = "Toward whole-brain maps of neural connections: Logical framework and fast implementation", BOOKTITLE = MMBIA12, YEAR = "2012", PAGES = "193-197", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT196837"} @article{bb201632, AUTHOR = "Becker, C. and Ali, K. and Knott, G. and Fua, P.", TITLE = "Learning Context Cues for Synapse Segmentation", JOURNAL = MedImg, VOLUME = "32", YEAR = "2013", NUMBER = "10", PAGES = "1864-1877", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT196838"} @article{bb201633, AUTHOR = "Trapp, M. and Schulze, F. and Buhler, K. and Liu, T. and Dickson, B.J.", TITLE = "3D object retrieval in an atlas of neuronal structures", JOURNAL = VC, VOLUME = "29", YEAR = "2013", NUMBER = "12", MONTH = "December", PAGES = "1363-1373", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT196839"} @article{bb201634, AUTHOR = "Juan, E.J. and Gonzalez, R. and Albors, G. and Ward, M.P. and Irazoqui, P.", TITLE = "Vagus nerve modulation using focused pulsed ultrasound: Potential applications and preliminary observations in a rat", JOURNAL = IJIST, VOLUME = "24", YEAR = "2014", NUMBER = "1", PAGES = "67-71", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT196840"} @article{bb201635, AUTHOR = "Jagadeesh, V. and Anderson, J. and Jones, B. and Marc, R. and Fisher, S. and Manjunath, B.S.", TITLE = "Synapse classification and localization in Electron Micrographs", JOURNAL = PRL, VOLUME = "43", YEAR = "2014", NUMBER = "1", PAGES = "17-24", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT196841"} @article{bb201636, AUTHOR = "Mukherjee, S. and Condron, B. and Acton, S.T.", TITLE = "Tubularity Flow Field: A Technique for Automatic Neuron Segmentation", JOURNAL = IP, VOLUME = "24", YEAR = "2015", NUMBER = "1", MONTH = "January", PAGES = "374-389", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT196842"} @article{bb201637, AUTHOR = "Weng, D. and Wang, Y. and Gong, M. and Tao, D. and Wei, H. and Huang, D.", TITLE = "DERF: Distinctive Efficient Robust Features From the Biological Modeling of the P Ganglion Cells", JOURNAL = IP, VOLUME = "24", YEAR = "2015", NUMBER = "8", MONTH = "August", PAGES = "2287-2302", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT196843"} @article{bb201638, AUTHOR = "Mata, G. and Morales, M. and Romero, A. and Rubio, J.", TITLE = "Zigzag persistent homology for processing neuronal images", JOURNAL = PRL, VOLUME = "62", YEAR = "2015", NUMBER = "1", PAGES = "55-60", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT196844"} @article{bb201639, AUTHOR = "Wu, Y.J. and Liu, B.Y.", TITLE = "Spatial and Anatomical Regularization Based on Multiple Kernel Learning for Neuroimaging Classification", JOURNAL = IEICE, VOLUME = "E99-D", YEAR = "2016", NUMBER = "4", MONTH = "April", PAGES = "1272-1274", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT196845"} @article{bb201640, AUTHOR = "Wu, Y.J. and Liu, B.Y.", TITLE = "Tensorial Kernel Based on Spatial Structure Information for Neuroimaging Classification", JOURNAL = IEICE, VOLUME = "E100-D", YEAR = "2017", NUMBER = "6", MONTH = "June", PAGES = "1380-1383", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT196846"} @article{bb201641, AUTHOR = "Basu, S. and Ooi, W.T. and Racoceanu, D.", TITLE = "Neurite Tracing With Object Process", JOURNAL = MedImg, VOLUME = "35", YEAR = "2016", NUMBER = "6", MONTH = "June", PAGES = "1443-1451", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT196847"} @inproceedings{bb201642, AUTHOR = "Basu, S. and Racoceanu, D.", TITLE = "Reconstructing neuronal morphology from microscopy stacks using fast marching", BOOKTITLE = ICIP14, YEAR = "2014", PAGES = "3597-3601", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT196848"} @article{bb201643, AUTHOR = "Li, Z.Y. and Fang, R. and Shen, F.M. and Katouzian, A. and Zhang, S.T.", TITLE = "Indexing and mining large-scale neuron databases using maximum inner product search", JOURNAL = PR, VOLUME = "63", YEAR = "2017", NUMBER = "1", PAGES = "680-688", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT196849"} @article{bb201644, AUTHOR = "He, X.X. and Lum, A. and Sharma, M. and Brahm, G. and Mercado, A. and Li, S.", TITLE = "Automated segmentation and area estimation of neural foramina with boundary regression model", JOURNAL = PR, VOLUME = "63", YEAR = "2017", NUMBER = "1", PAGES = "625-641", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT196850"} @article{bb201645, AUTHOR = "Gu, L. and Zhang, X.W. and Zhao, H. and Li, H.Q. and Cheng, L.", TITLE = "Segment 2D and 3D Filaments by Learning Structured and Contextual Features", JOURNAL = MedImg, VOLUME = "36", YEAR = "2017", NUMBER = "2", MONTH = "February", PAGES = "596-606", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT196851"} @article{bb201646, AUTHOR = "Li, R. and Zeng, T. and Peng, H. and Ji, S.", TITLE = "Deep Learning Segmentation of Optical Microscopy Images Improves 3-D Neuron Reconstruction", JOURNAL = MedImg, VOLUME = "36", YEAR = "2017", NUMBER = "7", MONTH = "July", PAGES = "1533-1541", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT196852"} @article{bb201647, AUTHOR = "Liu, M. and Gong, R. and Chen, W. and Peng, H.C.", TITLE = "3D neuron tip detection in volumetric microscopy images using an adaptive ray-shooting model", JOURNAL = PR, VOLUME = "75", YEAR = "2018", NUMBER = "1", PAGES = "263-271", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT196853"} @article{bb201648, AUTHOR = "Krasowski, N.E. and Beier, T. and Knott, G.W. and Kothe, U. and Hamprecht, F.A. and Kreshuk, A.", TITLE = "Neuron Segmentation With High-Level Biological Priors", JOURNAL = MedImg, VOLUME = "37", YEAR = "2018", NUMBER = "4", MONTH = "April", PAGES = "829-839", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT196854"} @article{bb201649, AUTHOR = "Liu, S. and Zhang, D. and Song, Y. and Peng, H. and Cai, W.", TITLE = "Automated 3-D Neuron Tracing With Precise Branch Erasing and Confidence Controlled Back Tracking", JOURNAL = MedImg, VOLUME = "37", YEAR = "2018", NUMBER = "11", MONTH = "November", PAGES = "2441-2452", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT196855"} @article{bb201650, AUTHOR = "Skibbe, H. and Reisert, M. and Nakae, K. and Watakabe, A. and Hata, J. and Mizukami, H. and Okano, H. and Yamamori, T. and Ishii, S.", TITLE = "PAT: Probabilistic Axon Tracking for Densely Labeled Neurons in Large 3-D Micrographs", JOURNAL = MedImg, VOLUME = "38", YEAR = "2019", NUMBER = "1", MONTH = "January", PAGES = "69-78", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT196856"} @article{bb201651, AUTHOR = "Funke, J. and Tschopp, F. and Grisaitis, W. and Sheridan, A. and Singh, C. and Saalfeld, S. and Turaga, S.C.", TITLE = "Large Scale Image Segmentation with Structured Loss Based Deep Learning for Connectome Reconstruction", JOURNAL = PAMI, VOLUME = "41", YEAR = "2019", NUMBER = "7", MONTH = "July", PAGES = "1669-1680", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT196857"} @article{bb201652, AUTHOR = "Gorriz, J.M. and Ramirez, J. and Suckling, J.", TITLE = "On the computation of distribution-free performance bounds: Application to small sample sizes in neuroimaging", JOURNAL = PR, VOLUME = "93", YEAR = "2019", PAGES = "1-13", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT196858"} @article{bb201653, AUTHOR = "Tang, R. and Ketcha, M. and Badea, A. and Calabrese, E.D. and Margulies, D.S. and Vogelstein, J.T. and Priebe, C.E. and Sussman, D.L.", TITLE = "Connectome smoothing via low-rank approximations", JOURNAL = MedImg, VOLUME = "38", YEAR = "2019", NUMBER = "6", MONTH = "June", PAGES = "1446-1456", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT196859"} @article{bb201654, AUTHOR = "Yi, J.R. and Wu, P.X. and Metaxas, D.N.", TITLE = "ASSD: Attentive single shot multibox detector", JOURNAL = CVIU, VOLUME = "189", YEAR = "2019", PAGES = "102827", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT196860"} @inproceedings{bb201655, AUTHOR = "Yi, J.R. and Wu, P.X. and Jiang, M. and Hoeppner, D.J. and Metaxas, D.N.", TITLE = "Instance Segmentation of Neural Cells", BOOKTITLE = BioIm18, YEAR = "2018", PAGES = "VI:395-402", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT196861"} @article{bb201656, AUTHOR = "Li, Q. and Shen, L.", TITLE = "3D Neuron Reconstruction in Tangled Neuronal Image With Deep Networks", JOURNAL = MedImg, VOLUME = "39", YEAR = "2020", NUMBER = "2", MONTH = "February", PAGES = "425-435", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT196862"} @article{bb201657, AUTHOR = "Zhao, J. and Chen, X.J. and Xiong, Z.W. and Liu, D. and Zeng, J.J. and Xie, C.Y. and Zhang, Y.Y. and Zha, Z.J. and Bi, G.Q. and Wu, F.", TITLE = "Neuronal Population Reconstruction From Ultra-Scale Optical Microscopy Images via Progressive Learning", JOURNAL = MedImg, VOLUME = "39", YEAR = "2020", NUMBER = "12", MONTH = "December", PAGES = "4034-4046", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT196863"} @article{bb201658, AUTHOR = "Chen, X.J. and Zhang, C. and Zhao, J. and Xiong, Z.W. and Zha, Z.J. and Wu, F.", TITLE = "Weakly Supervised Neuron Reconstruction From Optical Microscopy Images With Morphological Priors", JOURNAL = MedImg, VOLUME = "40", YEAR = "2021", NUMBER = "11", MONTH = "November", PAGES = "3205-3216", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT196864"} @article{bb201659, AUTHOR = "Jiang, Y. and Chen, W. and Liu, M. and Wang, Y. and Meijering, E.", TITLE = "3D Neuron Microscopy Image Segmentation via the Ray-Shooting Model and a DC-BLSTM Network", JOURNAL = MedImg, VOLUME = "40", YEAR = "2021", NUMBER = "1", MONTH = "January", PAGES = "26-37", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT196865"} @article{bb201660, AUTHOR = "Chen, W. and Liu, M. and Zhan, Q. and Tan, Y. and Meijering, E. and Radojevic, M. and Wang, Y.", TITLE = "Spherical-Patches Extraction for Deep-Learning-Based Critical Points Detection in 3D Neuron Microscopy Images", JOURNAL = MedImg, VOLUME = "40", YEAR = "2021", NUMBER = "2", MONTH = "February", PAGES = "527-538", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT196866"} @article{bb201661, AUTHOR = "Lee, K. and Lu, R. and Luther, K. and Seung, H.S.", TITLE = "Learning and Segmenting Dense Voxel Embeddings for 3D Neuron Reconstruction", JOURNAL = MedImg, VOLUME = "40", YEAR = "2021", NUMBER = "12", MONTH = "December", PAGES = "3801-3811", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT196867"} @article{bb201662, AUTHOR = "Maheswari, P.U. and Banumathi, A. and Ulaganathan, G. and Yoganandha, R.", TITLE = "Inferior alveolar nerve canal segmentation by local features based neural network model", JOURNAL = IET-IPR, VOLUME = "16", YEAR = "2022", NUMBER = "3", PAGES = "703-716", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT196868"} @article{bb201663, AUTHOR = "Song, P.F. and Verinaz Jadan, H. and Howe, C.L. and Foust, A.J. and Dragotti, P.L.", TITLE = "Light-Field Microscopy for the Optical Imaging of Neuronal Activity: When model-based methods meet data-driven approaches", JOURNAL = SPMag, VOLUME = "39", YEAR = "2022", NUMBER = "2", MONTH = "March", PAGES = "58-72", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT196869"} @article{bb201664, AUTHOR = "Yan, W.Z. and Qu, G. and Hu, W.X. and Abrol, A. and Cai, B. and Qiao, C. and Plis, S.M. and Wang, Y.P. and Sui, J. and Calhoun, V.D.", TITLE = "Deep Learning in Neuroimaging: Promises and challenges", JOURNAL = SPMag, VOLUME = "39", YEAR = "2022", NUMBER = "2", MONTH = "March", PAGES = "87-98", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT196870"} @article{bb201665, AUTHOR = "Yang, B. and Liu, M. and Wang, Y. and Zhang, K. and Meijering, E.", TITLE = "Structure-Guided Segmentation for 3D Neuron Reconstruction", JOURNAL = MedImg, VOLUME = "41", YEAR = "2022", NUMBER = "4", MONTH = "April", PAGES = "903-914", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT196871"} @article{bb201666, AUTHOR = "Chauvin, L. and Kumar, K. and Desrosiers, C. and Wells, W.M. and Toews, M.", TITLE = "Efficient Pairwise Neuroimage Analysis Using the Soft Jaccard Index and 3D Keypoint Sets", JOURNAL = MedImg, VOLUME = "41", YEAR = "2022", NUMBER = "4", MONTH = "April", PAGES = "836-845", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT196872"} @article{bb201667, AUTHOR = "Wang, X. and Liu, M. and Wang, Y. and Fan, J.W. and Meijering, E.", TITLE = "A 3D Tubular Flux Model for Centerline Extraction in Neuron Volumetric Images", JOURNAL = MedImg, VOLUME = "41", YEAR = "2022", NUMBER = "5", MONTH = "May", PAGES = "1069-1079", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT196873"} @article{bb201668, AUTHOR = "Chen, W. and Liu, M. and Du, H. and Radojevic, M. and Wang, Y. and Meijering, E.", TITLE = "Deep-Learning-Based Automated Neuron Reconstruction From 3D Microscopy Images Using Synthetic Training Images", JOURNAL = MedImg, VOLUME = "41", YEAR = "2022", NUMBER = "5", MONTH = "May", PAGES = "1031-1042", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT196874"} @article{bb201669, AUTHOR = "Nikoloska, I. and Simeone, O.", TITLE = "Training Hybrid Classical-Quantum Classifiers via Stochastic Variational Optimization", JOURNAL = SPLetters, VOLUME = "29", YEAR = "2022", PAGES = "977-981", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT196875"} @inproceedings{bb201670, AUTHOR = "Couedic, T.L. and Caillon, R. and Rossant, F. and Joutel, A. and Urien, H. and Rajani, R.M.", TITLE = "Deep-learning based segmentation of challenging myelin sheaths", BOOKTITLE = IPTA20, YEAR = "2020", PAGES = "1-6", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT196876"} @inproceedings{bb201671, AUTHOR = "Balwani, A. and Miano, J. and Liu, R. and Kitchell, L. and Prasad, J.A. and Johnson, E.C. and Gray Roncal, W. and Dyer, E.L.", TITLE = "Multi-Scale Modeling of Neural Structure in X-Ray Imagery", BOOKTITLE = ICIP21, YEAR = "2021", PAGES = "141-145", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT196877"} @inproceedings{bb201672, AUTHOR = "Huang, Y. and Zheng, F. and Wang, D.Y. and Huang, W. and Scott, M.R. and Shao, L.", TITLE = "Brain Image Synthesis with Unsupervised Multivariate Canonical CSC l4Net", BOOKTITLE = CVPR21, YEAR = "2021", PAGES = "5877-5886", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT196878"} @inproceedings{bb201673, AUTHOR = "You, Z. and Jiang, M. and Shi, Z. and Shi, C. and Du, S. and Liang, J. and Herard, A.S. and Jan, C. and Souedet, N. and Delzescaux, T.", TITLE = "Automated Detection Of Highly Aggregated Neurons In Microscopic Images Of Macaque Brain", BOOKTITLE = ICIP20, YEAR = "2020", PAGES = "315-319", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT196879"} @inproceedings{bb201674, AUTHOR = "Pan, X. and Ren, Y. and Sheng, K. and Dong, W. and Yuan, H. and Guo, X. and Ma, C. and Xu, C.", TITLE = "Dynamic Refinement Network for Oriented and Densely Packed Object Detection", BOOKTITLE = CVPR20, YEAR = "2020", PAGES = "11204-11213", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT196880"} @inproceedings{bb201675, AUTHOR = "Talwar, A. and Lin, Z. and Wei, D. and Wu, Y. and Zheng, B. and Zhao, J. and Jang, W. and Wang, X. and Lichtman, J. and Pfister, H.", TITLE = "A Topological Nomenclature for 3D Shape Analysis in Connectomics", BOOKTITLE = Microscopy20, YEAR = "2020", PAGES = "4245-4253", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT196881"} @inproceedings{bb201676, AUTHOR = "Klinghoffer, T. and Morales, P. and Park, Y. and Evans, N. and Chung, K. and Brattain, L.J.", TITLE = "Self-Supervised Feature Extraction for 3D Axon Segmentation", BOOKTITLE = Microscopy20, YEAR = "2020", PAGES = "4213-4219", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT196882"} @inproceedings{bb201677, AUTHOR = "Kim, E. and Rego, J. and Watkins, Y. and Kenyon, G.T.", TITLE = "Modeling Biological Immunity to Adversarial Examples", BOOKTITLE = CVPR20, YEAR = "2020", PAGES = "4665-4674", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT196883"} @inproceedings{bb201678, AUTHOR = "Hwang, S.J. and Tao, Z. and Singh, V. and Kim, W.H.", TITLE = "Conditional Recurrent Flow: Conditional Generation of Longitudinal Samples With Applications to Neuroimaging", BOOKTITLE = ICCV19, YEAR = "2019", PAGES = "10691-10700", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT196884"} @inproceedings{bb201679, AUTHOR = "Cortes, X. and Conte, D. and Makris, P.", TITLE = "Nerve Contour Tracking for Ultrasound-Guided Regional Anesthesia", BOOKTITLE = NTIAP19, YEAR = "2019", PAGES = "244-251", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT196885"} @inproceedings{bb201680, AUTHOR = "Parag, T. and Berger, D. and Kamentsky, L. and Staffler, B. and Wei, D. and Helmstaedter, M. and Lichtman, J.W. and Pfister, H.", TITLE = "Detecting Synapse Location and Connectivity by Signed Proximity Estimation and Pruning with Deep Nets", BOOKTITLE = BioIm18, YEAR = "2018", PAGES = "VI:354-364", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT196886"} @inproceedings{bb201681, AUTHOR = "Tan, Y.H. and Luo, H.Q. and Wang, X.P. and Liu, M.", TITLE = "Convolutional Neural Network Cascade Based Neuron Termination Detection in 3D Image Stacks", BOOKTITLE = ICIP18, YEAR = "2018", PAGES = "4048-4052", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT196887"} @inproceedings{bb201682, AUTHOR = "Liu, M. and Liu, K. and Wang, C. and Luo, H.", TITLE = "Local Neuron Radius Estimation in Volumetric Microscopy Images", BOOKTITLE = ICIP18, YEAR = "2018", PAGES = "3848-3852", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT196888"} @inproceedings{bb201683, AUTHOR = "Batabyal, T. and Acton, S.T.", TITLE = "Elastic Path2Path: Automated Morphological Classification of Neurons by Elastic Path Matching", BOOKTITLE = ICIP18, YEAR = "2018", PAGES = "166-170", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT196889"} @inproceedings{bb201684, AUTHOR = "Jimenez, C. and Diaz, D. and Salazar, D. and Alvarez, A.M. and Orozco, A.A. and Henao, O.A.", TITLE = "Nerve Structure Segmentation from Ultrasound Images Using Random Under-Sampling and an SVM Classifier", BOOKTITLE = ICIAR18, YEAR = "2018", PAGES = "571-578", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT196890"} @inproceedings{bb201685, AUTHOR = "Chai, X.Q. and Qian, D. and Ba, Q.L. and Li, A.R. and Zhang, Y.J.J. and Yang, G.", TITLE = "Image-based measurement of cargo traffic flow in complex neurite networks", BOOKTITLE = ICIP17, YEAR = "2017", PAGES = "3290-3294", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT196891"} @inproceedings{bb201686, AUTHOR = "Liang, H. and Acton, S.T. and Weller, D.S.", TITLE = "Content-aware neuron image enhancement", BOOKTITLE = ICIP17, YEAR = "2017", PAGES = "3510-3514", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT196892"} @inproceedings{bb201687, AUTHOR = "Shen, W. and Wang, B. and Jiang, Y. and Wang, Y. and Yuille, A.L.", TITLE = "Multi-stage Multi-recursive-input Fully Convolutional Networks for Neuronal Boundary Detection", BOOKTITLE = ICCV17, YEAR = "2017", PAGES = "2410-2419", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT196893"} @inproceedings{bb201688, AUTHOR = "Tang, Z. and Zhang, D. and Liu, S. and Song, Y. and Peng, H. and Cai, W.", TITLE = "Automatic 3D Single Neuron Reconstruction with Exhaustive Tracing", BOOKTITLE = BioIm17, YEAR = "2017", PAGES = "126-133", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT196894"} @inproceedings{bb201689, AUTHOR = "Kim, H.J. and Adluru, N. and Suri, H. and Vemuri, B.C. and Johnson, S.C. and Singh, V.", TITLE = "Riemannian Nonlinear Mixed Effects Models: Analyzing Longitudinal Deformations in Neuroimaging", BOOKTITLE = CVPR17, YEAR = "2017", PAGES = "5777-5786", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT196895"} @inproceedings{bb201690, AUTHOR = "He, L. and Lu, C.T. and Ding, H. and Wang, S. and Shen, L. and Yu, P.S. and Ragin, A.B.", TITLE = "Multi-way Multi-level Kernel Modeling for Neuroimaging Classification", BOOKTITLE = CVPR17, YEAR = "2017", PAGES = "6846-6854", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT196896"} @inproceedings{bb201691, AUTHOR = "Kim, W.H. and Jalal, M. and Hwang, S.J. and Johnson, S.C. and Singh, V.", TITLE = "Online Graph Completion: Multivariate Signal Recovery in Computer Vision", BOOKTITLE = CVPR17, YEAR = "2017", PAGES = "5019-5027", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT196897"} @inproceedings{bb201692, AUTHOR = "Ghani, M.U. and Erdil, E. and Kanik, S.D. and Argunsah, A.O. and Hobbiss, A.F. and Israely, I. and Unay, D. and Tasdizen, T. and Cetin, M.", TITLE = "Dendritic Spine Shape Analysis: A Clustering Perspective", BOOKTITLE = BioImage16, YEAR = "2016", PAGES = "I: 256-273", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT196898"} @inproceedings{bb201693, AUTHOR = "Mesbah, R. and McCane, B. and Mills, S.", TITLE = "Deep convolutional encoder-decoder for myelin and axon segmentation", BOOKTITLE = "ICVNZ16", YEAR = "2016", PAGES = "1-6", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT196899"} @inproceedings{bb201694, AUTHOR = "An, W. and Choe, Y.", TITLE = "Automated Reconstruction of Neurovascular Networks in Knife-Edge Scanning Microscope Rat Brain Nissl Data Set", BOOKTITLE = ISVC16, YEAR = "2016", PAGES = "I: 439-448", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT196900"} @inproceedings{bb201695, AUTHOR = "Xu, K. and Su, H. and Zhu, J. and Guan, J.S. and Zhang, B.", TITLE = "Neuron Segmentation Based on CNN with Semi-Supervised Regularization", BOOKTITLE = Microscopy16, YEAR = "2016", PAGES = "1324-1332", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT196901"} @inproceedings{bb201696, AUTHOR = "Chakraborty, R. and Zhen, X. and Vogt, N. and Bendlin, B.B. and Singh, V.", TITLE = "Dilated Convolutional Neural Networks for Sequential Manifold-Valued Data", BOOKTITLE = ICCV19, YEAR = "2019", PAGES = "10620-10630", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT196902"} @inproceedings{bb201697, AUTHOR = "Kim, W.H. and Hwang, S.J. and Adluru, N. and Hwang, S.J. and Adluru, N. and Collins, M.D. and Ravi, S.N. and Bendlin, B.B. and Johnson, S.C. and Singh, V.", TITLE = "Coupled Harmonic Bases for Longitudinal Characterization of Brain Networks", BOOKTITLE = CVPR16, YEAR = "2016", PAGES = "2517-2525", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT196903"} @inproceedings{bb201698, AUTHOR = "Johnson, S.C. and Singh, V.", TITLE = "Adaptive Signal Recovery on Graphs via Harmonic Analysis for Experimental Design in Neuroimaging", BOOKTITLE = ECCV16, YEAR = "2016", PAGES = "VI: 188-205", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT196904"} @inproceedings{bb201699, AUTHOR = "Bielecki, A. and Gierdziewicz, M. and Kalita, P. and Szostek, K.", TITLE = "Construction of a 3D Geometric Model of a Presynaptic Bouton for Use in Modeling of Neurotransmitter Flow", BOOKTITLE = ICCVG16, YEAR = "2016", PAGES = "377-386", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT196905"}