@inproceedings{bb254200, AUTHOR = "Bragantini, J. and Lange, M. and Royer, L.", TITLE = "Large-scale Multi-hypotheses Cell Tracking Using Ultrametric Contours Maps", BOOKTITLE = ECCV24, YEAR = "2024", PAGES = "LXXIX: 36-54", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851trk1.html#TT249088"} @inproceedings{bb254201, AUTHOR = "Acharya, S. and Ganguly, A. and Sarkar, R. and Jose, A.", TITLE = "Cell Cycle State Prediction Using Graph Neural Networks", BOOKTITLE = ICIP24, YEAR = "2024", PAGES = "2916-2922", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851trk1.html#TT249089"} @inproceedings{bb254202, AUTHOR = "Weijler, L. and Kowarsch, F. and Reiter, M. and Hermosilla, P. and Maurer Granofszky, M. and Dworzak, M.", TITLE = "FATE: Feature-Agnostic Transformer-based Encoder for learning generalized embedding spaces in flow cytometry data", BOOKTITLE = WACV24, YEAR = "2024", PAGES = "7941-7949", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851trk1.html#TT249090"} @inproceedings{bb254203, AUTHOR = "Reich, C. and Prangemeier, T. and Koeppl, H.", TITLE = "The TYC Dataset for Understanding Instance-Level Semantics and Motions of Cells in Microstructures", BOOKTITLE = BioIm23, YEAR = "2023", PAGES = "3942-3953", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851trk1.html#TT249091"} @inproceedings{bb254204, AUTHOR = "Jang, J.B. and Lee, K. and Kim, T.K.", TITLE = "Unsupervised Contour Tracking of Live Cells by Mechanical and Cycle Consistency Losses", BOOKTITLE = CVPR23, YEAR = "2023", PAGES = "227-236", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851trk1.html#TT249092"} @inproceedings{bb254205, AUTHOR = "Bribiesca Sanchez, A. and Guzman, A. and Darszon, A. and Corkidi, G. and Bribiesca, E.", TITLE = "A Measure of Tortuosity for 3d Curves: Identifying 3d Beating Patterns of Sperm Flagella", BOOKTITLE = IbPRIA23, YEAR = "2023", PAGES = "363-374", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851trk1.html#TT249093"} @inproceedings{bb254206, AUTHOR = "Ben Haim, T. and Raviv, T.R.", TITLE = "Graph Neural Network for Cell Tracking in Microscopy Videos", BOOKTITLE = ECCV22, YEAR = "2022", PAGES = "XXI:610-626", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851trk1.html#TT249094"} @inproceedings{bb254207, AUTHOR = "Harmanec, A. and Kadlecova, Z. and Sroubek, F.", TITLE = "Novel Reconstruction With Inter-Frame Motion Compensation For Fast Super-Resolution Live Cell Imaging", BOOKTITLE = ICIP22, YEAR = "2022", PAGES = "3211-3215", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851trk1.html#TT249095"} @inproceedings{bb254208, AUTHOR = "Hayashida, J. and Nishimura, K. and Bise, R.", TITLE = "Consistent Cell Tracking in Multi-frames with Spatio-Temporal Context by Object-Level Warping Loss", BOOKTITLE = WACV22, YEAR = "2022", PAGES = "1759-1768", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851trk1.html#TT249096"} @inproceedings{bb254209, AUTHOR = "Deng, X. and Sarkar, R. and Labruyere, E. and Olivo Marin, J.C. and Srivastava, A.", TITLE = "Modeling Shape Dynamics During Cell Motility in Microscopy Videos", BOOKTITLE = ICIP20, YEAR = "2020", PAGES = "2491-2495", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851trk1.html#TT249097"} @inproceedings{bb254210, AUTHOR = "Nishimura, K. and Hayashida, J. and Wang, C.Y. and Ker, D.F.E. and Bise, R.", TITLE = "Weakly-supervised Cell Tracking via Backward-and-forward Propagation", BOOKTITLE = ECCV20, YEAR = "2020", PAGES = "XII: 104-121", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851trk1.html#TT249098"} @inproceedings{bb254211, AUTHOR = "Hayashida, J. and Nishimura, K. and Bise, R.", TITLE = "MPM: Joint Representation of Motion and Position Map for Cell Tracking", BOOKTITLE = CVPR20, YEAR = "2020", PAGES = "3822-3831", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851trk1.html#TT249099"} @inproceedings{bb254212, AUTHOR = "Anjum, S. and Gurari, D.", TITLE = "CTMC: Cell Tracking with Mitosis Detection Dataset Challenge", BOOKTITLE = Microscopy20, YEAR = "2020", PAGES = "4228-4237", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851trk1.html#TT249100"} @inproceedings{bb254213, AUTHOR = "Almakady, Y. and Mahmoodi, S.", TITLE = "Texture-Based Region Tracking Using Gaussian Markov Random Fields for Cilia Motion Analysis", BOOKTITLE = ICIP19, YEAR = "2019", PAGES = "1292-1296", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851trk1.html#TT249101"} @inproceedings{bb254214, AUTHOR = "Ram, S. and Majdi, M.S. and Rodriguez, J.J. and Gao, Y. and Brooks, H.L.", TITLE = "Classification of Primary Cilia in Microscopy Images Using Convolutional Neural Random Forests", BOOKTITLE = Southwest18, YEAR = "2018", PAGES = "89-92", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851trk1.html#TT249102"} @inproceedings{bb254215, AUTHOR = "Dewan, K. and Dastidar, T.R. and Ahmad, M.", TITLE = "Estimation of Sperm Concentration and Total Motility from Microscopic Videos of Human Semen Samples", BOOKTITLE = Microscopy18, YEAR = "2018", PAGES = "2380-23807", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851trk1.html#TT249103"} @inproceedings{bb254216, AUTHOR = "Shaker, F. and Monadjemi, S.A. and Alirezaie, J.", TITLE = "Classification of human sperm heads using elliptic features and LDA", BOOKTITLE = IPRIA17, YEAR = "2017", PAGES = "151-155", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851trk1.html#TT249104"} @inproceedings{bb254217, AUTHOR = "Rempfler, M. and Lange, J.H. and Jug, F. and Blasse, C. and Myers, E.W. and Menze, B.H. and Andres, B.", TITLE = "Efficient Algorithms for Moral Lineage Tracing", BOOKTITLE = ICCV17, YEAR = "2017", PAGES = "4705-4714", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851trk1.html#TT249105"} @inproceedings{bb254218, AUTHOR = "Maska, M. and Matula, P.", TITLE = "Particle Tracking Accuracy Measurement Based on Comparison of Linear Oriented Forests", BOOKTITLE = BioIm17, YEAR = "2017", PAGES = "11-17", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851trk1.html#TT249106"} @inproceedings{bb254219, AUTHOR = "Fortun, D. and Debroux, N. and Kervrann, C.", TITLE = "Spatially-Variant Kernel for Optical Flow Under Low Signal-to-Noise Ratios Application to Microscopy", BOOKTITLE = BioIm17, YEAR = "2017", PAGES = "42-48", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851trk1.html#TT249107"} @inproceedings{bb254220, AUTHOR = "Selka, F. and Blein, T. and Burguet, J. and Biot, E. and Laufs, P. and Andrey, P.", TITLE = "Towards a Spatio-Temporal Atlas of 3D Cellular Parameters During Leaf Morphogenesis", BOOKTITLE = BioIm17, YEAR = "2017", PAGES = "56-63", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851trk1.html#TT249108"} @inproceedings{bb254221, AUTHOR = "Lai, Y. and Kamata, S.i. and Fu, Z.", TITLE = "Robust registration of serial cell microscopic images using 3D Hilbert scan search", BOOKTITLE = MVA17, YEAR = "2017", PAGES = "530-533", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851trk1.html#TT249109"} @inproceedings{bb254222, AUTHOR = "Jug, F. and Levinkov, E. and Blasse, C. and Myers, E.W. and Andres, B.", TITLE = "Moral Lineage Tracing", BOOKTITLE = CVPR16, YEAR = "2016", PAGES = "5926-5935", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851trk1.html#TT249110"} @inproceedings{bb254223, AUTHOR = "Matuszewski, D.J. and Sintorn, I.M. and Puigvert, J.C. and Wahlby, C.", TITLE = "Comparison of Flow Cytometry and Image-Based Screening for Cell Cycle Analysis", BOOKTITLE = ICIAR16, YEAR = "2016", PAGES = "623-630", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851trk1.html#TT249111"} @inproceedings{bb254224, AUTHOR = "Medina Rodriguez, R. and Guzman Masias, L. and Alatrista Salas, H. and Beltran Castanon, C.", TITLE = "Sperm Cells Segmentation in Micrographic Images Through Lambertian Reflectance Model", BOOKTITLE = CAIP15, YEAR = "2015", PAGES = "II:664-674", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851trk1.html#TT249112"} @inproceedings{bb254225, AUTHOR = "Cheng, J.R. and Xiong, W. and Gu, Y. and Chia, S.C. and Wang, Y. and Lim, J.H.", TITLE = "A Three-Color Coupled Level-Set Algorithm for Simultaneous Multiple Cell Segmentation and Tracking", BOOKTITLE = ACCV14, YEAR = "2014", PAGES = "III: 268-283", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851trk1.html#TT249113"} @inproceedings{bb254226, AUTHOR = "Ramesh, N. and Tasdizen, T.", TITLE = "Cell tracking using particle filters with implicit convex shape model in 4D confocal microscopy images", BOOKTITLE = ICIP14, YEAR = "2014", PAGES = "446-450", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851trk1.html#TT249114"} @inproceedings{bb254227, AUTHOR = "Chakraborty, A. and Roy Chowdhury, A.K.", TITLE = "A conditional random field model for tracking in densely packed cell structures", BOOKTITLE = ICIP14, YEAR = "2014", PAGES = "451-455", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851trk1.html#TT249115"} @inproceedings{bb254228, AUTHOR = "Saha, B.N. and Ray, N. and McArdle, S. and Ley, K.", TITLE = "A two-stage minimum spanning tree (MST) based clustering algorithm for 2D deformable registration of time sequenced images", BOOKTITLE = ICIP17, YEAR = "2017", PAGES = "1472-1476", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851trk1.html#TT249116"} @inproceedings{bb254229, AUTHOR = "McArdle, S. and Acton, S.T. and Ley, K. and Ray, N.", TITLE = "Registering sequences of in vivo microscopy images for cell tracking using dynamic programming and minimum spanning trees", BOOKTITLE = ICIP14, YEAR = "2014", PAGES = "3547-3551", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851trk1.html#TT249117"} @inproceedings{bb254230, AUTHOR = "Esteves, T. and Carvalho, A. and Monteiro, F.J. and Quelhas, P.", TITLE = "Periodic Background Pattern Detection and Removal for Cell Tracking", BOOKTITLE = ICIAR14, YEAR = "2014", PAGES = "II: 123-131", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851trk1.html#TT249118"} @inproceedings{bb254231, AUTHOR = "Okabe, T. and Hotta, K.", TITLE = "Accuracy Improvement of Melanosome Tracking by Error Correction", BOOKTITLE = DICTA13, YEAR = "2013", PAGES = "1-8", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851trk1.html#TT249119"} @inproceedings{bb254232, AUTHOR = "Kausler, B.X. and Schiegg, M. and Andres, B. and Lindner, M. and Koethe, U. and Leitte, H. and Wittbrodt, J. and Hufnagel, L. and Hamprecht, F.A.", TITLE = "A Discrete Chain Graph Model for 3d+t Cell Tracking with High Misdetection Robustness", BOOKTITLE = ECCV12, YEAR = "2012", PAGES = "III: 144-157", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851trk1.html#TT249120"} @inproceedings{bb254233, AUTHOR = "Wang, Q. and Ou, Y. and Julius, A.A. and Boyer, K.L. and Kim, M.J.", TITLE = "Tracking Tetrahymena pyriformis cells using decision trees", BOOKTITLE = ICPR12, YEAR = "2012", PAGES = "1843-1847", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851trk1.html#TT249121"} @inproceedings{bb254234, AUTHOR = "Chowdhury, A.S. and Paul, A. and Bunyak, F. and Cornelison, D.D.W. and Palaniappan, K.", TITLE = "Semi-automated tracking of muscle satellite cells in brightfield microscopy video", BOOKTITLE = ICIP12, YEAR = "2012", PAGES = "2825-2828", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851trk1.html#TT249122"} @inproceedings{bb254235, AUTHOR = "Saha, U. and Singh, R.", TITLE = "Vision-based Tracking of Complex Macroparasites for High-content Phenotypic Drug Screening", BOOKTITLE = ISVC12, YEAR = "2012", PAGES = "II: 104-114", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851trk1.html#TT249123"} @inproceedings{bb254236, AUTHOR = "Garcia Olalla, O. and Alegre, E. and Fernandez Robles, L. and Garcia Ordas, M.T.", TITLE = "Vitality Assessment of Boar Sperm Using an Adaptive LBP Based on Oriented Deviation", BOOKTITLE = CVLBP12, YEAR = "2012", PAGES = "I:61-72", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851trk1.html#TT249124"} @inproceedings{bb254237, AUTHOR = "Gonzalez Castro, V. and Alegre, E. and Garcia Olalla, O. and Garcia Ordas, D. and Garcia Ordas, M.T. and Fernandez Robles, L.", TITLE = "Curvelet-Based Texture Description to Classify Intact and Damaged Boar Spermatozoa", BOOKTITLE = ICIAR12, YEAR = "2012", PAGES = "II: 448-455", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851trk1.html#TT249125"} @inproceedings{bb254238, AUTHOR = "Mkrtchyan, K. and Singh, D. and Liu, M. and Reddy, V. and Roy Chowdhury, A. and Gopi, M.", TITLE = "Efficient cell segmentation and tracking of developing plant meristem", BOOKTITLE = ICIP11, YEAR = "2011", PAGES = "2165-2168", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851trk1.html#TT249126"} @inproceedings{bb254239, AUTHOR = "Chowdhury, A.S. and Chatterjee, R. and Ghosh, M. and Ray, N.", TITLE = "Cell Tracking in Video Microscopy Using Bipartite Graph Matching", BOOKTITLE = ICPR10, YEAR = "2010", PAGES = "2456-2459", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851trk1.html#TT249127"} @inproceedings{bb254240, AUTHOR = "Iwanowski, M. and Korzynska, A.", TITLE = "Segmentation of Moving Cells in Bright Field and Epi-Fluorescent Microscopic Image Sequences", BOOKTITLE = ICCVG10, YEAR = "2010", PAGES = "I: 401-410", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851trk1.html#TT249128"} @inproceedings{bb254241, AUTHOR = "Ong, L.L.S. and Ang, M.H. and Asada, H.H.", TITLE = "Tracking of cell population from time lapse and end point confocal microscopy images with multiple hypothesis Kalman smoothing filters", BOOKTITLE = MMBIA10, YEAR = "2010", PAGES = "71-78", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851trk1.html#TT249129"} @inproceedings{bb254242, AUTHOR = "Thirusittampalam, K. and Hossain, M.J. and Ghita, O. and Whelan, P.F.", TITLE = "A Novel Framework for Tracking In-vitro Cells in Time-lapse Phase Contrast Data", BOOKTITLE = BMVC10, YEAR = "2010", PAGES = "xx-yy", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851trk1.html#TT249130"} @inproceedings{bb254243, AUTHOR = "Thirusittampalam, K. and Hossain, M.J. and Ghita, O. and Whelan, P.F.", TITLE = "Cellular Tracking in Time-Lapse Phase Contrast Images", BOOKTITLE = IMVIP09, YEAR = "2009", PAGES = "77-82", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851trk1.html#TT249131"} @inproceedings{bb254244, AUTHOR = "Mohamed, R. and El Baz, A. and Navalta, J.", TITLE = "Assessment of exercise-induced immune cell apoptosis using morphological image processing", BOOKTITLE = ICIP09, YEAR = "2009", PAGES = "2649-2652", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851trk1.html#TT249132"} @inproceedings{bb254245, AUTHOR = "Quelhas, P. and Mendonca, A.M. and Campilho, A.", TITLE = "Optical Flow Based Arabidopsis Thaliana Root Meristem Cell Division Detection", BOOKTITLE = ICIAR10, YEAR = "2010", PAGES = "II: 217-226", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851trk1.html#TT249133"} @inproceedings{bb254246, AUTHOR = "Marcuzzo, M. and Guichard, T. and Quelhas, P. and Mendonca, A.M. and Campilho, A.", TITLE = "Cell Division Detection on the Arabidopsis Thaliana Root", BOOKTITLE = IbPRIA09, YEAR = "2009", PAGES = "168-175", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851trk1.html#TT249134"} @inproceedings{bb254247, AUTHOR = "Marcuzzo, M. and Quelhas, P. and Campilho, A. and Mendonca, A.M. and Campilho, A.", TITLE = "A Hybrid Approach for Arabidopsis Root Cell Image Segmentation", BOOKTITLE = ICIAR08, YEAR = "2008", PAGES = "xx-yy", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851trk1.html#TT249135"} @inproceedings{bb254248, AUTHOR = "Marcuzzo, M. and Quelhas, P. and Mendonca, A.M. and Campilho, A.", TITLE = "Tracking of Arabidopsis thaliana root cells in time-lapse microscopy", BOOKTITLE = ICPR08, YEAR = "2008", PAGES = "1-4", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851trk1.html#TT249136"} @inproceedings{bb254249, AUTHOR = "Sanchez, L. and Gonzalez, V. and Alegre, E. and Alaiz, R.", TITLE = "Classification and Quantification Based on Image Analysis for Sperm Samples with Uncertain Damaged/Intact Cell Proportions", BOOKTITLE = ICIAR08, YEAR = "2008", PAGES = "xx-yy", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851trk1.html#TT249137"} @inproceedings{bb254250, AUTHOR = "Garcia, B. and Campilho, A. and Scheres, B. and Campilho, A.", TITLE = "Automatic Tracking of Arabidopsis thaliana Root Meristem in Confocal Microscopy", BOOKTITLE = ICIAR04, YEAR = "2004", PAGES = "II: 166-174", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851trk1.html#TT249138"} @inproceedings{bb254251, AUTHOR = "Nguyen, N. and Keller, S. and Huynh, T. and Shin, M.", TITLE = "Tracking colliding cells", BOOKTITLE = WACV09, YEAR = "2009", PAGES = "1-7", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851trk1.html#TT249139"} @inproceedings{bb254252, AUTHOR = "Russell, C. and Metaxas, D.N. and Restif, C. and Torr, P.H.S.", TITLE = "Using the Pn Potts model with learning methods to segment live cell images", BOOKTITLE = MMBIA07, YEAR = "2007", PAGES = "1-8", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851trk1.html#TT249140"} @inproceedings{bb254253, AUTHOR = "Nath, S.K. and Bunyak, F. and Palaniappan, K.", TITLE = "Robust Tracking of Migrating Cells Using Four-Color Level Set Segmentation", BOOKTITLE = ACIVS06, YEAR = "2006", PAGES = "920-932", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851trk1.html#TT249141"} @inproceedings{bb254254, AUTHOR = "Li, K. and Miller, E.D. and Weiss, L.E. and Campbell, P.G. and Kanade, T.", TITLE = "Online Tracking of Migrating and Proliferating Cells Imaged with Phase-Contrast Microscopy", BOOKTITLE = MMBIA06, YEAR = "2006", PAGES = "65", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851trk1.html#TT249142"} @inproceedings{bb254255, AUTHOR = "Yang, G. and Matov, A. and Danuser, G.", TITLE = "Reliable Tracking of Large Scale Dense Antiparallel Particle Motion for Fluorescence Live Cell Imaging", BOOKTITLE = "BioInfo05", YEAR = "2005", PAGES = "III: 138-138", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851trk1.html#TT249143"} @inproceedings{bb254256, AUTHOR = "Kanade, T. and Li, K.", TITLE = "Tracking of Migrating and Proliferating Cells in Phase-Contrast Microscopy Imagery for Tissue Engineering", BOOKTITLE = CVBIA05, YEAR = "2005", PAGES = "24-24", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851trk1.html#TT249144"} @inproceedings{bb254257, AUTHOR = "Ray, N. and Dong, G. and Acton, S.T.", TITLE = "Tracking Multiple Cells by Correspondence Resolution in a Sequential Bayesian Framework", BOOKTITLE = ICIP05, YEAR = "2005", PAGES = "I: 705-708", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851trk1.html#TT249145"} @article{bb254258, AUTHOR = "Berkes, P. and Wiskott, L.", TITLE = "Applying slow feature analysis to image sequences yields a rich repertoire of complex cell properties", JOURNAL = "ICANN02", PAGES = "81-86", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851trk1.html#TT249146"} @inproceedings{bb254259, AUTHOR = "McNally, J.G.", TITLE = "Computational optical-sectioning microscopy for 3D quantification of cell motion: results and challenges", BOOKTITLE = ICIP94, YEAR = "1994", PAGES = "III: 528-532", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851trk1.html#TT249147"} @article{bb254260, AUTHOR = "Belson, M. and Dudley, A.W. and Ledley, R.S.", TITLE = "Automatic Computer Measurements of Neurons", JOURNAL = PR, VOLUME = "1", YEAR = "1968", NUMBER = "2", MONTH = "November", PAGES = "119-128", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT249148"} @article{bb254261, AUTHOR = "Li, Z.N. and Uhr, L.", TITLE = "A pyramidal approach for the recognition of neurons using key features", JOURNAL = PR, VOLUME = "19", YEAR = "1986", NUMBER = "1", PAGES = "55-62", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT249149"} @article{bb254262, AUTHOR = "Fok, Y.L. and Chan, J.C.K. and Chin, R.T.", TITLE = "Automated analysis of nerve-cell images using active contour models", JOURNAL = MedImg, VOLUME = "15", YEAR = "1996", NUMBER = "3", MONTH = "June", PAGES = "353-368", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT249150"} @article{bb254263, AUTHOR = "Phillips, J.W. and Leahy, R.M. and Mosher, J.C.", TITLE = "MEG-based imaging of focal neuronal current sources", JOURNAL = MedImg, VOLUME = "16", YEAR = "1997", NUMBER = "3", MONTH = "June", PAGES = "338-348", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT249151"} @article{bb254264, AUTHOR = "Dima, A. and Scholz, M. and Obermayer, K.", TITLE = "Automatic segmentation and skeletonization of neurons from confocal microscopy images based on the 3-d wavelet transform", JOURNAL = IP, VOLUME = "11", YEAR = "2002", NUMBER = "7", MONTH = "July", PAGES = "790-801", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT249152"} @article{bb254265, AUTHOR = "Ruthazer, E.S. and Cline, H.T.", TITLE = "Multiphoton Imaging of Neurons in Living Tissue: Acquisition and Analysis of Time-Lapse Morphological Data", JOURNAL = RealTimeImg, VOLUME = "8", YEAR = "2002", NUMBER = "3", MONTH = "June", PAGES = "175-188", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT249153"} @article{bb254266, AUTHOR = "Ortiz, F. and Torres, F. and de Juan, E. and Cuenca, N.", TITLE = "Colour Mathematical Morphology for Neural Image Analysis", JOURNAL = RealTimeImg, VOLUME = "8", YEAR = "2002", NUMBER = "6", MONTH = "December", PAGES = "455-465", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT249154"} @article{bb254267, AUTHOR = "Fudenberg, G. and Paninski, L.", TITLE = "Bayesian Image Recovery for Dendritic Structures Under Low Signal-to-Noise Conditions", JOURNAL = IP, VOLUME = "18", YEAR = "2009", NUMBER = "3", MONTH = "March", PAGES = "471-482", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT249155"} @article{bb254268, AUTHOR = "Li, Q. and Deng, Z. and Zhang, Y. and Zhou, X. and Valentin Nagerl, U. and Wong, S.T.C.", TITLE = "A Global Spatial Similarity Optimization Scheme to Track Large Numbers of Dendritic Spines in Time-Lapse Confocal Microscopy", JOURNAL = MedImg, VOLUME = "30", YEAR = "2011", NUMBER = "3", MONTH = "March", PAGES = "632-641", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT249156"} @article{bb254269, AUTHOR = "Salimi Khorshidi, G. and Nichols, T.E. and Smith, S.M. and Woolrich, M.W.", TITLE = "Using Gaussian-Process Regression for Meta-Analytic Neuroimaging Inference Based on Sparse Observations", JOURNAL = MedImg, VOLUME = "30", YEAR = "2011", NUMBER = "7", MONTH = "July", PAGES = "1401-1416", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT249157"} @article{bb254270, AUTHOR = "Akselrod Ballin, A. and Bock, D. and Reid, R.C. and Warfield, S.K.", TITLE = "Accelerating Image Registration With the Johnson-Lindenstrauss Lemma: Application to Imaging 3-D Neural Ultrastructure With Electron Microscopy", JOURNAL = MedImg, VOLUME = "30", YEAR = "2011", NUMBER = "7", MONTH = "July", PAGES = "1427-1438", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT249158"} @article{bb254271, AUTHOR = "Li, Q. and Deng, Z.", TITLE = "A Surface-Based 3-D Dendritic Spine Detection Approach From Confocal Microscopy Images", JOURNAL = IP, VOLUME = "21", YEAR = "2012", NUMBER = "3", MONTH = "March", PAGES = "1223-1230", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT249159"} @article{bb254272, AUTHOR = "Pereira, F. and Botvinick, M. and Detre, G.", TITLE = "Using Wikipedia to learn semantic feature representations of concrete concepts in neuroimaging experiments", JOURNAL = AI, VOLUME = "194", YEAR = "2013", NUMBER = "1", MONTH = "January", PAGES = "240-252", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT249160"} @article{bb254273, AUTHOR = "Zhang, M. and Sakaie, K.E. and Jones, S.E.", TITLE = "Logical Foundations and Fast Implementation of Probabilistic Tractography", JOURNAL = MedImg, VOLUME = "32", YEAR = "2013", NUMBER = "8", PAGES = "1397-1410", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT249161"} @inproceedings{bb254274, AUTHOR = "Zhang, M. and Sakaie, K.E. and Jones, S.E.", TITLE = "Toward whole-brain maps of neural connections: Logical framework and fast implementation", BOOKTITLE = MMBIA12, YEAR = "2012", PAGES = "193-197", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT249162"} @article{bb254275, AUTHOR = "Becker, C. and Ali, K. and Knott, G. and Fua, P.", TITLE = "Learning Context Cues for Synapse Segmentation", JOURNAL = MedImg, VOLUME = "32", YEAR = "2013", NUMBER = "10", PAGES = "1864-1877", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT249163"} @article{bb254276, AUTHOR = "Trapp, M. and Schulze, F. and Buhler, K. and Liu, T. and Dickson, B.J.", TITLE = "3D object retrieval in an atlas of neuronal structures", JOURNAL = VC, VOLUME = "29", YEAR = "2013", NUMBER = "12", MONTH = "December", PAGES = "1363-1373", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT249164"} @article{bb254277, AUTHOR = "Juan, E.J. and Gonzalez, R. and Albors, G. and Ward, M.P. and Irazoqui, P.", TITLE = "Vagus nerve modulation using focused pulsed ultrasound: Potential applications and preliminary observations in a rat", JOURNAL = IJIST, VOLUME = "24", YEAR = "2014", NUMBER = "1", PAGES = "67-71", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT249165"} @article{bb254278, AUTHOR = "Jagadeesh, V. and Anderson, J. and Jones, B. and Marc, R. and Fisher, S. and Manjunath, B.S.", TITLE = "Synapse classification and localization in Electron Micrographs", JOURNAL = PRL, VOLUME = "43", YEAR = "2014", NUMBER = "1", PAGES = "17-24", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT249166"} @article{bb254279, AUTHOR = "Mukherjee, S. and Condron, B. and Acton, S.T.", TITLE = "Tubularity Flow Field: A Technique for Automatic Neuron Segmentation", JOURNAL = IP, VOLUME = "24", YEAR = "2015", NUMBER = "1", MONTH = "January", PAGES = "374-389", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT249167"} @article{bb254280, AUTHOR = "Weng, D. and Wang, Y. and Gong, M. and Tao, D. and Wei, H. and Huang, D.", TITLE = "DERF: Distinctive Efficient Robust Features From the Biological Modeling of the P Ganglion Cells", JOURNAL = IP, VOLUME = "24", YEAR = "2015", NUMBER = "8", MONTH = "August", PAGES = "2287-2302", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT249168"} @article{bb254281, AUTHOR = "Mata, G. and Morales, M. and Romero, A. and Rubio, J.", TITLE = "Zigzag persistent homology for processing neuronal images", JOURNAL = PRL, VOLUME = "62", YEAR = "2015", NUMBER = "1", PAGES = "55-60", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT249169"} @article{bb254282, AUTHOR = "Wu, Y.J. and Liu, B.Y.", TITLE = "Spatial and Anatomical Regularization Based on Multiple Kernel Learning for Neuroimaging Classification", JOURNAL = IEICE, VOLUME = "E99-D", YEAR = "2016", NUMBER = "4", MONTH = "April", PAGES = "1272-1274", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT249170"} @article{bb254283, AUTHOR = "Wu, Y.J. and Liu, B.Y.", TITLE = "Tensorial Kernel Based on Spatial Structure Information for Neuroimaging Classification", JOURNAL = IEICE, VOLUME = "E100-D", YEAR = "2017", NUMBER = "6", MONTH = "June", PAGES = "1380-1383", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT249171"} @article{bb254284, AUTHOR = "Basu, S. and Ooi, W.T. and Racoceanu, D.", TITLE = "Neurite Tracing With Object Process", JOURNAL = MedImg, VOLUME = "35", YEAR = "2016", NUMBER = "6", MONTH = "June", PAGES = "1443-1451", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT249172"} @inproceedings{bb254285, AUTHOR = "Basu, S. and Racoceanu, D.", TITLE = "Reconstructing neuronal morphology from microscopy stacks using fast marching", BOOKTITLE = ICIP14, YEAR = "2014", PAGES = "3597-3601", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT249173"} @article{bb254286, AUTHOR = "Li, Z.Y. and Fang, R. and Shen, F.M. and Katouzian, A. and Zhang, S.T.", TITLE = "Indexing and mining large-scale neuron databases using maximum inner product search", JOURNAL = PR, VOLUME = "63", YEAR = "2017", NUMBER = "1", PAGES = "680-688", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT249174"} @article{bb254287, AUTHOR = "He, X.X. and Lum, A. and Sharma, M. and Brahm, G. and Mercado, A. and Li, S.", TITLE = "Automated segmentation and area estimation of neural foramina with boundary regression model", JOURNAL = PR, VOLUME = "63", YEAR = "2017", NUMBER = "1", PAGES = "625-641", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT249175"} @article{bb254288, AUTHOR = "Gu, L. and Zhang, X.W. and Zhao, H. and Li, H.Q. and Cheng, L.", TITLE = "Segment 2D and 3D Filaments by Learning Structured and Contextual Features", JOURNAL = MedImg, VOLUME = "36", YEAR = "2017", NUMBER = "2", MONTH = "February", PAGES = "596-606", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT249176"} @article{bb254289, AUTHOR = "Li, R.J. and Zeng, T. and Peng, H.C. and Ji, S.W.", TITLE = "Deep Learning Segmentation of Optical Microscopy Images Improves 3-D Neuron Reconstruction", JOURNAL = MedImg, VOLUME = "36", YEAR = "2017", NUMBER = "7", MONTH = "July", PAGES = "1533-1541", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT249177"} @article{bb254290, AUTHOR = "Liu, M. and Gong, R. and Chen, W. and Peng, H.C.", TITLE = "3D neuron tip detection in volumetric microscopy images using an adaptive ray-shooting model", JOURNAL = PR, VOLUME = "75", YEAR = "2018", NUMBER = "1", PAGES = "263-271", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT249178"} @article{bb254291, AUTHOR = "Krasowski, N.E. and Beier, T. and Knott, G.W. and Kothe, U. and Hamprecht, F.A. and Kreshuk, A.", TITLE = "Neuron Segmentation With High-Level Biological Priors", JOURNAL = MedImg, VOLUME = "37", YEAR = "2018", NUMBER = "4", MONTH = "April", PAGES = "829-839", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT249179"} @inproceedings{bb254292, AUTHOR = "Hilt, P. and Zarvandi, M. and Kaziakhmedov, E. and Bhide, S. and Laptin, M. and Pape, C. and Kreshuk, A.", TITLE = "Reinforcement learning for instance segmentation with high-level priors", BOOKTITLE = BioIm23, YEAR = "2023", PAGES = "3915-3924", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT249180"} @article{bb254293, AUTHOR = "Liu, S. and Zhang, D. and Song, Y. and Peng, H. and Cai, W.", TITLE = "Automated 3-D Neuron Tracing With Precise Branch Erasing and Confidence Controlled Back Tracking", JOURNAL = MedImg, VOLUME = "37", YEAR = "2018", NUMBER = "11", MONTH = "November", PAGES = "2441-2452", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT249181"} @article{bb254294, AUTHOR = "Skibbe, H. and Reisert, M. and Nakae, K. and Watakabe, A. and Hata, J. and Mizukami, H. and Okano, H. and Yamamori, T. and Ishii, S.", TITLE = "PAT: Probabilistic Axon Tracking for Densely Labeled Neurons in Large 3-D Micrographs", JOURNAL = MedImg, VOLUME = "38", YEAR = "2019", NUMBER = "1", MONTH = "January", PAGES = "69-78", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT249182"} @article{bb254295, AUTHOR = "Funke, J. and Tschopp, F. and Grisaitis, W. and Sheridan, A. and Singh, C. and Saalfeld, S. and Turaga, S.C.", TITLE = "Large Scale Image Segmentation with Structured Loss Based Deep Learning for Connectome Reconstruction", JOURNAL = PAMI, VOLUME = "41", YEAR = "2019", NUMBER = "7", MONTH = "July", PAGES = "1669-1680", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT249183"} @article{bb254296, AUTHOR = "Gorriz, J.M. and Ramirez, J. and Suckling, J.", TITLE = "On the computation of distribution-free performance bounds: Application to small sample sizes in neuroimaging", JOURNAL = PR, VOLUME = "93", YEAR = "2019", PAGES = "1-13", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT249184"} @article{bb254297, AUTHOR = "Tang, R. and Ketcha, M. and Badea, A. and Calabrese, E.D. and Margulies, D.S. and Vogelstein, J.T. and Priebe, C.E. and Sussman, D.L.", TITLE = "Connectome smoothing via low-rank approximations", JOURNAL = MedImg, VOLUME = "38", YEAR = "2019", NUMBER = "6", MONTH = "June", PAGES = "1446-1456", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT249185"} @article{bb254298, AUTHOR = "Yi, J.R. and Wu, P.X. and Metaxas, D.N.", TITLE = "ASSD: Attentive single shot multibox detector", JOURNAL = CVIU, VOLUME = "189", YEAR = "2019", PAGES = "102827", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT249186"} @inproceedings{bb254299, AUTHOR = "Yi, J.R. and Wu, P.X. and Jiang, M.L. and Hoeppner, D.J. and Metaxas, D.N.", TITLE = "Instance Segmentation of Neural Cells", BOOKTITLE = BioIm18, YEAR = "2018", PAGES = "VI:395-402", BIBSOURCE = "http://www.visionbib.com/bibliography/medical851neu1.html#TT249187"}