20.1.3.2 Virus Extraction, Virus Analysis

Chapter Contents (Back)
Virus.

Zheng, Y.B.[Yi-Bin], Doerschuk, P.C.,
3-D Image Reconstruction from Averaged Fourier Transform Magnitude by Parameter Estimation,
IP(7), No. 11, November 1998, pp. 1561-1570.
IEEE DOI BibRef 9811
Earlier:
Reconstruction of viruses from solution X-ray scattering data,
ICIP95(I: 434-437).
IEEE DOI 9510
BibRef

Zheng, Y.B.[Yi-Bin], Li, T.[Tao], Doerschuk, P.C., Johnson, J.E.,
Low resolution 3D reconstructions of viruses from X-ray crystal diffraction data,
ICIP98(III: 358-360).
IEEE DOI 9810
BibRef

Gao, W.[Wen], Doerschuk, P.C.,
Reconstruction problems in 3D for viral cryo electron microscopy,
ICIP98(II: 706-708).
IEEE DOI 9810
BibRef

Doerschuk, P.C.,
X-ray crystallographic imaging,
ICIP94(III: 538-542).
IEEE DOI 9411
BibRef

Yu, Z., Bajaj, C.,
Automatic Ultrastructure Segmentation of Reconstructed CryoEM Maps of Icosahedral Viruses,
IP(14), No. 9, September 2005, pp. 1324-1337.
IEEE DOI 0508
BibRef

Lee, J., Doerschuk, P.C., Johnson, J.E.,
Exact Reduced-Complexity Maximum Likelihood Reconstruction of Multiple 3-D Objects From Unlabeled Unoriented 2-D Projections and Electron Microscopy of Viruses,
IP(16), No. 12, December 2007, pp. 2865-2878.
IEEE DOI 0711
BibRef

Zheng, Y.[Yili], Wang, Q.[Qiu], Doerschuk, P.C.[Peter C.],
Three-dimensional reconstruction of the statistics of heterogeneous objects from a collection of one projection image of each object,
JOSA-A(29), No. 6, June 2012, pp. 959-970 2012.
WWW Link. 1206
BibRef

Godinez, W.J., Lampe, M., Koch, P., Eils, R., Muller, B., Rohr, K.,
Identifying Virus-Cell Fusion in Two-Channel Fluorescence Microscopy Image Sequences Based on a Layered Probabilistic Approach,
MedImg(31), No. 9, September 2012, pp. 1786-1808.
IEEE DOI 1209
BibRef

Proenca, M.D.C.M.S., Nunes, J.F.M., de Matos, A.P.A.,
Automatic Virus Particle Selection: The Entropy Approach,
IP(22), No. 5, May 2013, pp. 1996-2003.
IEEE DOI 1304
Locate icosahedral virus particles in transmission electron microscopy images. BibRef

Godinez, W.J., Rohr, K.,
Tracking Multiple Particles in Fluorescence Time-Lapse Microscopy Images via Probabilistic Data Association,
MedImg(34), No. 2, February 2015, pp. 415-432.
IEEE DOI 1502
Atmospheric measurements BibRef

Jaiswal, A., Godinez, W.J., Eils, R., Lehmann, M.J., Rohr, K.,
Tracking Virus Particles in Fluorescence Microscopy Images Using Multi-Scale Detection and Multi-Frame Association,
IP(24), No. 11, November 2015, pp. 4122-4136.
IEEE DOI 1509
Kalman filters BibRef

Wen, Z.J.[Zhi-Jie], Li, Z.[Zhuojun], Peng, Y.[Yaxin], Ying, S.[Shihui],
Virus image classification using multi-scale completed local binary pattern features extracted from filtered images by multi-scale principal component analysis,
PRL(79), No. 1, 2016, pp. 25-30.
Elsevier DOI 1608
Virus Image BibRef

Wang, K., Fu, C.y., Catalano, C.E., Prevelige, P.E., Doerschuk, P.C., Johnson, J.E.,
Detecting asymmetry in the presence of symmetry with maximum likelihood three-dimensional reconstructions of viruses from electron microscope images,
IET-IPR(10), No. 8, 2016, pp. 624-629.
DOI Link 1608
biological techniques BibRef

Xu, N., Doerschuk, P.C.,
Reconstruction of Stochastic 3D Signals With Symmetric Statistics From 2D Projection Images Motivated by Cryo-Electron Microscopy,
IP(28), No. 11, November 2019, pp. 5479-5494.
IEEE DOI 1909
Scattering, Electron microscopy, Proteins, Image reconstruction, Viruses (medical), Cryo-electron microscopy, viruses, heterogeneity characterization BibRef


Zhang, L., Yan, W.Q.,
Deep Learning Methods for Virus Identification from Digital Images,
IVCNZ20(1-6)
IEEE DOI 2012
Deep learning, Visualization, Digital images, Predictive models, Electron microscopy, Reliability, Viruses (medical), electron microscopy images BibRef

Siedhoff, D., Strauch, M., Shpacovitch, V., Merhof, D.,
Unsupervised data analysis for virus detection with a surface plasmon resonance sensor,
IPTA17(1-6)
IEEE DOI 1804
biosensors, data analysis, health care, matrix decomposition, medical image processing, microorganisms, Unsupervised BibRef

Mitra, U.[Uddalak], Bhattacharyya, B.[Balaram],
Classification of Vector-Borne Virus Through Totally Ordered Set of Dinucleotide Interval Patterns,
PReMI17(405-410).
Springer DOI 1711
BibRef

Xu, N.[Nan], Doerschuk, P.C.[Peter C.],
Reconstruction for stochastic 3-D signals with symmetric statistics in noise: Electron microscopy of virus particles,
ICIP15(1444-1447)
IEEE DOI 1512
cryo electron microscopy BibRef

Oliveira, L.M.[Lucas M.], Herman, G.T.[Gabor T.], Kong, T.Y.[Tat Yung], Gottlieb, P.[Paul], Katz, A.[Al],
Using a Topological Descriptor to Investigate Structures of Virus Particles,
IWCIA14(62-75).
Springer DOI 1405
BibRef

Sintorn, I.M.[Ida-Maria], Kylberg, G.[Gustaf],
Virus Recognition Based on Local Texture,
ICPR14(3227-3232)
IEEE DOI 1412
Image segmentation BibRef

Gopinath, A.[Ajay], Bovik, A.C.[Alan C.],
Generating a statistical shape model of the AIDS virus spike,
Southwest12(25-28).
IEEE DOI 1205
BibRef

Gopinath, A.[Ajay],
Reconstruction comparison and a composite segmentation method for electron tomography,
ICIP10(585-588).
IEEE DOI 1009
BibRef

Kylberg, G.[Gustaf], Uppström, M.[Mats], Sintorn, I.M.[Ida-Maria],
Virus Texture Analysis Using Local Binary Patterns and Radial Density Profiles,
CIARP11(573-580).
Springer DOI 1111
BibRef

Kylberg, G.[Gustaf], Sintorn, I.M.[Ida-Maria], Borgefors, G.[Gunilla],
Towards Automated TEM for Virus Diagnostics: Segmentation of Grid Squares and Detection of Regions of Interest,
SCIA09(169-178).
Springer DOI 0906
BibRef

Zheng, Y., Yin, Z.[Zbye], Doerscbuk, P.C.,
3-d maximum likelihood reconstructions of viruses from cryo electron microscope images and parallel computation,
ICIP02(II: 617-620).
IEEE DOI 0210
BibRef

Matuszewski, B.J., Shark, L.K.,
Hierarchical Iterative Bayesian Approach to Automatic Recognition of Biological Viruses in Electron Microscope Images,
ICIP01(II: 347-350).
IEEE DOI 0108
BibRef

Thuman-Commike, P., and Chiu, W.,
Three-Dimensional Reconstruction of Noisy Electron Microscopy Virus Particle Images,
ICIP97(I: 173-176).
IEEE DOI BibRef 9700
Earlier:
Detection of virus particles in noisy spot-scan electron cryomicroscopy images,
ICIP95(III: 168-171).
IEEE DOI 9510
BibRef

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