Matson, W.L.[William L.],
McKinstry, H.A.,
Johnson, Jr., G.G.,
White, E.W.,
McMillan, R.E.,
Computer processing of SEM images by contour analyses,
PR(2), No. 4, December 1970, pp. 303-306.
WWW Link.
0309
scanning electron microscope images.
BibRef
Sandler, S.S.[Sheldon S.],
Direct three-dimensional analysis of electron micrograph pictures,
PR(4), No. 4, December 1972, pp. 353-359.
WWW Link.
0309
The method consists of presenting a unique relation between the
projection pictures and the original densities.
BibRef
Kriete, A.,
Haucke, M.,
Gerlach, B.,
Harms, H.,
Aus, H.M.,
A Preprocessing Method for the Contrast Enhancement of
TV-Scanned Electron Microscopic Images,
PR(17), No. 3, 1984, pp. 305-311.
WWW Link.
BibRef
8400
White, E.W.,
Mayberry, K.,
Johnson, Jr., G.G.,
Computer analysis of multi-channel SEM and X-ray images from fine
particles,
PR(4), No. 2, May 1972, pp. 173-192.
WWW Link.
0309
Scanning electron microscope
BibRef
Favre, A.,
Keller, H.,
Local image transformation: An application in biological electron
microscopy,
PR(13), No. 2, 1981, pp. 177-187.
WWW Link.
0309
BibRef
Phillips, T.Y.[Tsai-Yun],
Davis, L.S.[Larry S.],
Rosenfeld, A.[Azriel],
Automatic Segmentation of Electron Micrographs of Berea Sandstone
Cross-Sections,
PR(16), No. 4, 1983, pp. 385-400.
WWW Link.
0309
BibRef
Kriete, A.,
Aus, H.M.,
On-Line Processing of Transmission Electron Microscopic Images,
PRL(4), 1986, pp. 285-292.
BibRef
8600
Selfridge, P.G.,
Locating Neuron Boundaries in Electron
Micrograph Images Using 'Primal Sketch' Primitives,
CVGIP(34), No. 2, May 1986, pp. 156-165.
WWW Link.
BibRef
8605
And:
Tracing Neurons Through Serial Sections: Using Knowledge of Shape
to Improve Performance,
CVPR86(418-420).
Shows that iso-intensity contours do not work, but does not mention
other edge techniques. Use edges, search techniques, and prediction
of position.
BibRef
Zapata, E.L.,
Benavides, I.,
Rivera, F.F.,
Bruguera, J.D.,
Pena, T.F.,
Carazo, J.M.,
Image reconstruction on hypercube computers:
Application to electron microscopy,
SP(27), No. 1, 1992, pp. 51-64.
BibRef
9200
Ong, S.H.,
Giam, S.T.,
Jayasooriah,
Sinniah, R.,
Adaptive window-based tracking for the detection of membrane structures
in kidney electron micrographs,
MVA(6), No. 4, 1993, pp. 215-223.
BibRef
9300
Vrhel, M.J.,
Unser, M.,
Multichannel Restoration with Limited A Priori Information,
IP(8), No. 4, April 1999, pp. 527-536.
IEEE DOI electron microscopy of biological macromolecules
BibRef
9904
Vrhel, M.J.,
Trus, B.L.,
Multi-channel restoration of electron micrographs,
ICIP95(II: 516-519).
IEEE DOI
9510
BibRef
Kayaalp, A.,
Rao, A.R.[A. Ravishankar],
Jain, R.,
Scanning Electron Microscope-Based Stereo Analysis,
MVA(3), No. 4, 1990, pp. 231-246.
BibRef
9000
Earlier:
CVPR89(429-434).
IEEE DOI
BibRef
Herman, G.T.[Gabor T.],
Marabini, R.[Roberto],
Carazo, J.M.[José-María],
Garduńo, E.[Edgar],
Lewitt, R.M.[Robert M.],
Matej, S.[Samuel],
Image processing approaches to biological three-dimensional electron
microscopy,
IJIST(11), No. 1, 2000, pp. 12-29.
0005
BibRef
Marabini, R.,
Sorzano, C.O.S.,
Matej, S.,
Fernandez, J.J.,
Carazo, J.M.,
Herman, G.T.,
3-D Reconstruction of 2-D Crystals in Real Space,
IP(13), No. 4, April 2004, pp. 549-561.
IEEE DOI
0404
BibRef
And:
Corrections:
IP(13), No. 8, August 2004, pp. 1157-1157.
IEEE DOI
BibRef
Ruiz, V.G.,
Fernández, J.J.,
López, M.F.,
García, I.,
Progressive Image Transmission in Telemicroscopy: A Quantitative
Approach for Electron Microscopy Images of Biological Specimens,
RealTimeImg(8), No. 6, December 2002, pp. 519-544.
WWW Link.
0304
BibRef
Pattichis, M.S.,
Pattichis, C.S.,
Avraam, M.,
Bovik, A.C.,
Kyriacou, K.,
AM-FM texture segmentation in electron microscopic muscle imaging,
MedImg(19), No. 12, December 2000, pp. 1253-1257.
IEEE Top Reference.
0110
BibRef
Sorzano, C.O.S.,
Marabini, R.,
Herman, G.T.,
Carazo, J.M.,
Multiobjective algorithm parameter optimization using multivariate
statistics in three-dimensional electron microscopy reconstruction,
PR(38), No. 12, December 2005, pp. 2587-2601.
WWW Link.
0510
BibRef
Salzenstein, F.[Fabien],
Montgomery, P.C.[Paul C.],
Montaner, D.[Denis],
Boudraa, A.O.[Abdel-Ouahab],
Teager-Kaiser Energy and Higher-Order Operators in White-Light
Interference Microscopy for Surface Shape Measurement,
JASP(2005), No. 17, 2005, pp. 2804-2815.
WWW Link.
0603
BibRef
Hu, T.,
Nunez-Iglesias, J.,
Vitaladevuni, S.,
Scheffer, L.,
Xu, S.,
Bolorizadeh, M.,
Hess, H.,
Fetter, R.,
Chklovskii, D.B.,
Electron Microscopy Reconstruction of Brain Structure Using Sparse
Representations Over Learned Dictionaries,
MedImg(32), No. 12, 2013, pp. 2179-2188.
IEEE DOI
1312
Brain
BibRef
Ito, K.[Koichi],
Suzuki, A.[Ayako],
Aoki, T.[Takafumi],
Tsuneta, R.[Ruriko],
Image-based magnification calibration for electron microscope,
MVA(25), No. 1, January 2014, pp. 185-197.
WWW Link.
1402
BibRef
Wang, L.,
Singer, A.,
Wen, Z.,
Orientation Determination of Cryo-EM Images Using Least Unsquared
Deviations,
SIIMS(6), No. 4, 2013, pp. 2450-2483.
DOI Link
1402
cryo-electron microscopy
BibRef
Ober, R.J.,
Tahmasbi, A.,
Ram, S.,
Lin, Z.[Zhiping],
Ward, E.S.,
Quantitative Aspects of Single-Molecule Microscopy:
Information-theoretic analysis of single-molecule data,
SPMag(32), No. 1, January 2015, pp. 58-69.
IEEE DOI
1502
image processing
BibRef
Chen, Y.H.[Yu-Hui],
Wei, D.,
Newstadt, G.,
De Graef, M.,
Simmons, J.,
Hero, A.,
Parameter Estimation in Spherical Symmetry Groups,
SPLetters(22), No. 8, August 2015, pp. 1152-1155.
IEEE DOI
1502
crystal orientation
BibRef
Katsevich, E.,
Katsevich, A.,
Singer, A.,
Covariance Matrix Estimation for the Cryo-EM Heterogeneity Problem,
SIIMS(8), No. 1, 2015, pp. 126-185.
DOI Link
1503
cryo-electron microscopy.
BibRef
Jensen, K.H.,
Sigworth, F.J.,
Brandt, S.S.,
Removal of Vesicle Structures From Transmission Electron Microscope
Images,
IP(25), No. 2, February 2016, pp. 540-552.
IEEE DOI
1601
Adaptation models
BibRef
Huang, C.,
Tagare, H.D.,
Robust w-Estimators for Cryo-EM Class Means,
IP(25), No. 2, February 2016, pp. 893-906.
IEEE DOI
1601
Correlation
BibRef
Gaddam, C.K.[Chethan K.],
Huang, C.H.[Chung-Hsuan],
Wal, R.L.V.[Randy L. Vander],
Quantification of nano-scale carbon structure by HRTEM and lattice
fringe analysis,
PRL(76), No. 1, 2016, pp. 90-97.
Elsevier DOI
1605
Lattice fringe analysis
BibRef
Chao, J.[Jerry],
Ward, E.S.[E. Sally],
Ober, R.J.[Raimund J.],
Fisher information theory for parameter estimation in single molecule
microscopy: tutorial,
JOSA-A(33), No. 7, July 2016, pp. B36-B57.
DOI Link
1608
Probability theory, stochastic processes, and statistics
BibRef
Ashok, A.[Amit],
Piestun, R.[Rafael],
Stallinga, S.[Sjoerd],
Single molecule image formation, reconstruction and processing:
introduction,
JOSA-A(33), No. 7, July 2016, pp. SMI1-SMI2.
DOI Link
1608
General; General physics
BibRef
Sheppard, C.J.R.[Colin J. R.],
Castello, M.[Marco],
Tortarolo, G.[Giorgio],
Vicidomini, G.[Giuseppe],
Diaspro, A.[Alberto],
Image formation in image scanning microscopy, including the case of
two-photon excitation,
JOSA-A(34), No. 8, August 2017, pp. 1339-1350.
DOI Link
1708
Optical transfer functions, Confocal microscopy,
Fluorescence microscopy, Scanning microscopy, Multiphoton, processes
BibRef
Liu, Q.[Qing],
Yang, X.P.[Xiao-Ping],
Zhao, X.L.[Xiao-Long],
Ling, W.J.[Wei-Jun],
Lu, F.P.[Fei-Ping],
Zhao, Y.X.[Yu-Xiang],
Microscopic image enhancement of Chinese Herbal Medicine based on
fuzzy set,
ICIVC17(299-302)
IEEE DOI
1708
Electron microscopy, Feature extraction, Finite element analysis,
Fuzzy sets, Image enhancement, Laplace equations,
Chinese herbal medicine, fuzzy set, image enhancement, microscopic, image
BibRef
Abdollahzadeh, A.[Ali],
Acar, E.[Erman],
Peltonen, S.[Sari],
Ruotsalainen, U.[Ulla],
Local Adaptive Wiener Filtering for Class Averaging in Single Particle
Reconstruction,
SCIA17(II: 233-244).
Springer DOI
1706
cryo-electron microscopy.
BibRef
Millane, R.P.,
Wojtas, D.H.,
Arnal, R.D.,
Extreme imaging:
Macromolecular imaging using x-ray free-electron lasers,
ICVNZ16(1-6)
IEEE DOI
1701
Crystallography
BibRef
Štepka, K.[Karel],
Maška, M.[Martin],
Pálenik, J.J.[Jakub Jozef],
Pospíchalová, V.[Vendula],
Kotrbová, A.[Anna],
Ilkovics, L.[Ladislav],
Klemová, D.[Dobromila],
Hampl, A.[Aleš],
Bryja, V.[Vítezslav],
Matula, P.[Pavel],
Automatic Detection and Segmentation of Exosomes in Transmission
Electron Microscopy,
BioImage16(I: 318-325).
Springer DOI
1611
BibRef
Colabrese, S.,
Castello, M.,
Vicidomini, G.,
Del Bue, A.,
Learning-based approach to boost detection rate and localisation
accuracy in single molecule localisation microscopy,
ICIP16(3184-3188)
IEEE DOI
1610
Diffraction
BibRef
Gong, Y.,
Doerschuk, P.C.,
3-D understanding of electron microscopy images of nano bio objects
by computing generative mechanical models,
ICIP16(3161-3165)
IEEE DOI
1610
Biological system modeling
BibRef
Michels, Y.,
Baudrier, É.,
Retrieving the parameters of cryo Electron Microscopy dataset in the
heterogeneous ab-initio case,
ICIP16(3189-3193)
IEEE DOI
1610
Estimation
BibRef
Lin, Y.Z.[You-Zuo],
Kandel, Y.[Yudhishthir],
Zotta, M.[Matthew],
Lifshin, E.[Eric],
SEM resolution improvement using semi-blind restoration with hybrid
L1-L2 regularization,
Southwest16(33-36)
IEEE DOI
1605
Scanning electron microscopy.
Image resolution
BibRef
Parag, T.,
Ciresan, D.C.,
Giusti, A.,
Efficient Classifier Training to Minimize False Merges in Electron
Microscopy Segmentation,
ICCV15(657-665)
IEEE DOI
1602
Algorithm design and analysis
BibRef
Wang, Q.[Qiu],
Doerschuk, P.C.[Peter C.],
3-D image reconstruction for bio nanomachines with helical symmetry:
Image formation theory,
ICIP15(892-896)
IEEE DOI
1512
cryo electron microscopy
BibRef
Gong, Y.[Yunye],
Doerschuk, P.C.[Peter C.],
Determining fluctuation in bio-nanomachines from electron microscopy
images,
ICIP15(262-265)
IEEE DOI
1512
cryo electron microscopy
BibRef
Shenoy, R.[Renuka],
Shih, M.C.[Min-Chi],
Rose, K.[Kenneth],
Segmentation of cells in electron microscopy images through
multimodal label transfer,
ICIP15(103-107)
IEEE DOI
1512
Electron Microscopy; Multimodal; Segmentation
BibRef
Xu, X.P.[Xiao-Ping],
Page, C.[Christopher],
Volkmann, N.[Niels],
Efficient Extraction of Macromolecular Complexes from Electron
Tomograms Based on Reduced Representation Templates,
CAIP15(I:423-431).
Springer DOI
1512
BibRef
Sousa, R.G.[Ricardo Gamelas],
Esteves, T.[Tiago],
Rocha, S.[Sara],
Figueiredo, F.[Francisco],
Quelhas, P.[Pedro],
Silva, L.M.[Luís M.],
Automatic Detection of Immunogold Particles from Electron Microscopy
Images,
ICIAR15(377-384).
Springer DOI
1507
BibRef
Habibullah,
Rehman, O.U.[Obaid Ur],
Pota, H.R.,
Petersen, I.R.,
Internal reference model based optimal LQG controller for atomic force
microscope,
ICARCV12(294-299).
IEEE DOI
1304
BibRef
Lind, J.[Jonathan],
Rollett, A.D.[Anthony D.],
Pokharel, R.[Reeju],
Hefferan, C.[Christopher],
Li, S.F.[Shiu-Fai],
Lienert, U.[Ulrich],
Suter, R.[Robert],
Image processing in experiments on, and simulations of plastic
deformation of polycrystals,
ICIP14(4877-4881)
IEEE DOI
1502
Diffraction
BibRef
Egelman, E.H.[Edward H.],
New advances in imaging polymers at near-atomic resolution,
ICIP14(2071-2074)
IEEE DOI
1502
Detectors
BibRef
Wang, Y.F.[Yun-Feng],
Kilpatrick, J.I.[Jason I.],
Jarvis, S.P.[Suzanne P.],
Boland, F.[Frank],
Kokaram, A.[Anil],
Corrigan, D.[David],
Automated registration of low and high resolution atomic force
microscopy images using scale invariant features,
ICIP14(5866-5870)
IEEE DOI
1502
Atomic force microscopy
BibRef
Le Guen, V.[Vincent],
Paul, N.[Nicolas],
A Scanning Electron Microscope image segmentation method for steam
generator fouling rate estimation,
ICIP14(4447-4451)
IEEE DOI
1502
Clustering algorithms
BibRef
Thierry, R.[Raphael],
Kirschmann, M.[Moritz],
Hummel, E.[Eric],
Hawes, C.[Chris],
Genoud, C.[Christel],
Demon registration for 3D images obtained by serial block face
scanning electron microscopy,
ICIP14(3587-3591)
IEEE DOI
1502
Algorithm design and analysis
BibRef
Nam, D.[David],
Mantell, J.[Judith],
Hodgson, L.[Lorna],
Bull, D.[David],
Verkade, P.[Paul],
Achim, A.[Alin],
Feature-based registration for correlative light and electron
microscopy images,
ICIP14(3567-3571)
IEEE DOI
1502
Image registration
BibRef
Sorzano, C.O.S.,
Vargas, J.,
Oton, J.,
Abrishami, V.,
de la Rosa-Trevin, J.M.,
del Riego, S.,
Fernandez-Alderete, A.,
Martinez-Rey, C.,
Marabini, R.,
Carazo, J.M.,
An image processing approach to the simulation of electron microscopy
volumes of atomic structures,
ICIP14(2095-2099)
IEEE DOI
1502
Atomic clocks
BibRef
Jin, Q.[Qiyu],
Sorzano, C.O.S.[Carlos Oscar Sanchez],
Callebaut, I.[Isabelle],
Tama, F.[Florence],
Jonic, S.[Slavica],
Elastic image registration to fully explore macromolecular dynamics
by electron microscopy,
ICIP14(2075-2079)
IEEE DOI
1502
Assembly
BibRef
Tafti, A.P.[A. Pahlavan],
Kirkpatrick, A.B.,
Owen, H.A.,
Yu, Z.,
3D Microscopy Vision Using Multiple View Geometry and Differential
Evolutionary Approaches,
ISVC14(II: 141-152).
Springer DOI
1501
BibRef
Roels, J.[Joris],
Aelterman, J.[Jan],
De Vylder, J.[Jonas],
Luong, H.[Hiep],
Saeys, Y.[Yvan],
Lippens, S.[Saskia],
Philips, W.[Wilfried],
Noise Analysis and Removal in 3D Electron Microscopy,
ISVC14(I: 31-40).
Springer DOI
1501
BibRef
Iwahori, Y.[Yuji],
Funahashi, K.[Kenji],
Woodham, R.J.[Robert J.],
Bhuyan, M.K.,
Neural Network Based Image Modification for Shape from Observed SEM
Images,
ICPR14(2131-2136)
IEEE DOI
1412
Scanning Electron Microscope.
BibRef
Azadi, S.[Samaneh],
Maitin-Shepard, J.[Jeremy],
Abbeel, P.[Pieter],
Optimization-Based Artifact Correction for Electron Microscopy Image
Stacks,
ECCV14(II: 219-235).
Springer DOI
1408
BibRef
Veeraraghavan, A.[Ashok],
Genkin, Alex.V.,
Vitaladevuni, S.[Shiv],
Scheffer, L.[Lou],
Xu, S.[Shan],
Hess, H.[Harald],
Fetter, R.[Richard],
Cantoni, M.[Marco],
Knott, G.[Graham],
Chklovskii, D.[Dmitri],
Increasing depth resolution of electron microscopy of neural circuits
using sparse tomographic reconstruction,
CVPR10(1767-1774).
IEEE DOI Video of talk:
WWW Link.
1006
BibRef
Kim, D.S.[Dong Sik],
Intensity compensation of the mitochondria tilted image sequence
obtained from the transmission electron microscopy,
ICIP09(1777-1780).
IEEE DOI
0911
BibRef
Mendizibal, A.,
Cabrera, J.,
Salgado, L.,
Garcia, N.,
Gonzalez, J.C.,
Unsupervised segmentation algorithm of HRTEM images,
ICIP04(IV: 2757-2760).
IEEE DOI
0505
high resolution transmission electron microscopy.
BibRef
Bilbao-Castro, J.R.,
Carazo, J.M.,
Garcia, L.,
Fernandez, J.J.,
Parallel iterative reconstruction methods for structure determination
of biological specimens by electron microscopy,
ICIP03(I: 565-568).
IEEE DOI
0312
BibRef
Zheng, Y.,
Yin, Z.[Zbye],
Doerscbuk, P.C.,
3-d maximum likelihood reconstructions of viruses from cryo electron
microscope images and parallel computation,
ICIP02(II: 617-620).
IEEE DOI
0210
BibRef
Matuszewski, B.J.,
Shark, L.K.,
Hierarchical Iterative Bayesian Approach to Automatic Recognition of
Biological Viruses in Electron Microscope Images,
ICIP01(II: 347-350).
IEEE DOI
0108
BibRef
Skoglund, U.,
Ofverstedt, L.G.,
Image 3-D Reconstruction from Electron Micrographs,
SSAB97(Medical)
9703
BibRef
Saad, A.,
Chiu, W.,
Thuman-Commike, P.A.,
Multiresolution approach to automatic detection of spherical particles
from electron cryomicroscopy images,
ICIP98(III: 846-850).
IEEE DOI
9810
BibRef
Thuman-Commike, P., and
Chiu, W.,
Three-Dimensional Reconstruction of Noisy
Electron Microscopy Virus Particle Images,
ICIP97(I: 173-176).
IEEE DOI
BibRef
9700
Earlier:
Detection of virus particles in noisy spot-scan electron cryomicroscopy
images,
ICIP95(III: 168-171).
IEEE DOI
9510
BibRef
Van Dyck, D.,
Op de Beeck, M.,
How image processing can push electron microscopy to its limits,
ICIP95(III: 41-44).
IEEE DOI
9510
BibRef
Van Dyck, D.,
Op de Beeck, M.,
Tang, D.,
Jansen, J.,
Zandbergen, H.W.,
A global entropy criterion for focus tuning in exit wavefunction
reconstruction in high resolution electron microscopy,
ICIP96(I: 737-740).
IEEE DOI
9610
BibRef
Van Dyck, D.,
Op de Beeck, M.,
Coene, W.,
Object wavefunction reconstruction in high resolution electron
microscopy,
ICIP94(III: 295-298).
IEEE DOI
9411
BibRef
Cop, M.,
Dengler, J.,
A multiresolution approach to the 3D reconstruction of a 50S ribosome
from an EM-tilt series solving the alignment problem without gold
particles,
ICPR90(I: 733-737).
IEEE DOI
9006
electron microscopy
BibRef
Chapter on Computational Vision, Regularization, Connectionist, Morphology, Scale-Space, Perceptual Grouping, Wavelets, Color, Sensors, Optical, Laser, Radar continues in
Phase Unwrapping, Stereo Depth unwrapping .