20.1.1 Medical Applications, Microscope Image Analysis

Chapter Contents (Back)
Microscope. See also Electron Microscope Images and Sensors.

Bartels, P.H., Gahm, T., Thompson, D.,
Automated Microscopy in Diagnostic Histopathology: From Image-Processing to Automated Reasoning,
IJIST(8), No. 2, 1997, pp. 214-223. 9704
BibRef

Von Wegner, F., Both, M., Fink, R.H.A., Friedrich, O.,
Fast XYT Imaging of Elementary Calcium Release Events in Muscle With Multifocal Multiphoton Microscopy and Wavelet Denoising and Detection,
MedImg(26), No. 7, July 2007, pp. 925-934.
IEEE DOI 0707
BibRef

Yeom, S., Moon, I, Javidi, B.,
Real-Time 3-D Sensing, Visualization and Recognition of Dynamic Biological Microorganisms,
PIEEE(94), No. 3, March 2006, pp. 550-566.
IEEE DOI 0603
BibRef

Cortés, L.[Leandro], Amit, Y.[Yali],
Efficient Annotation of Vesicle Dynamics Video Microscopy,
PAMI(30), No. 11, November 2008, pp. 1998-2010.
IEEE DOI 0809
BibRef

Bodvarsson, B., Klim, S., Morkebjerg, M., Mortensen, S., Yoon, C.H., Chen, J., Maclaren, J.R., Luther, P.K., Squire, J.M., Bones, P.J., Millane, R.P.,
A morphological image processing method for locating myosin filaments in muscle electron micrographs,
IVC(26), No. 8, 1 August 2008, pp. 1073-1080.
Elsevier DOI 0806
Image analysis; Morphology; Electron micrograph; Disorder; Myosin; Muscle BibRef

Begelman, G., Zibulevsky, M., Rivlin, E., Kolatt, T.,
Blind Decomposition of Transmission Light Microscopic Hyperspectral Cube Using Sparse Representation,
MedImg(28), No. 8, August 2009, pp. 1317-1324.
IEEE DOI 0909
BibRef

Begelman, G.[Grigory], Pechuk, M.[Michael], Rivlin, E.[Ehud], Sabo, E.[Edmond],
System for Computer-Aided Multiresolution Microscopic Pathology Diagnostics,
CVS06(16).
IEEE DOI 0602
BibRef

Maurer, M.R.[Mauricio Rafael], Pedrini, H.[Helio], Ferreira Randi, M.A.[Marco Antonio],
Processing and Visualization of Light Microscope Images,
IJIG(9), No. 3, July 2009, pp. 369-388.
DOI Link 0911
BibRef

Calapez, A., Rosa, A.,
A Statistical Pixel Intensity Model for Segmentation of Confocal Laser Scanning Microscopy Images,
IP(19), No. 9, September 2010, pp. 2408-2418.
IEEE DOI 1008
BibRef

Roberts, T.J.[Timothy J.], McKenna, S.J.[Stephen J.], Du, C.J.[Cheng-Jin], Wuyts, N.[Nathalie], Valentine, T.A.[Tracy A.], Bengough, A.G.[A. Glyn],
Estimating the motion of plant root cells from in vivo confocal laser scanning microscopy images,
MVA(21), No. 6, October 2010, pp. 921-939.
WWW Link. 1011
BibRef

Díaz, M.E.[María Elena], Ayala, G.[Guillermo], Díaz, E.[Ester],
Estimating the Duration of Overlapping Events from Image Sequences Using Cylindrical Temporal Boolean Models,
JMIV(38), No. 2, October 2010, pp. 83-94.
WWW Link. 1011
Cell biology, microscope analysis. BibRef

Kenig, T.[Tal], Kam, Z.[Zvi], Feuer, A.[Arie],
Blind Image Deconvolution Using Machine Learning for Three-Dimensional Microscopy,
PAMI(32), No. 12, December 2010, pp. 2191-2204.
IEEE DOI 1011
for microscopic image enhancement. BibRef

Lee, S.H.[Seung-Hee], Doerschuk, P.C., Johnson, J.E.,
Multiclass Maximum-Likelihood Symmetry Determination and Motif Reconstruction of 3-D Helical Objects From Projection Images for Electron Microscopy,
IP(20), No. 7, July 2011, pp. 1962-1976.
IEEE DOI 1107
BibRef

Prust, C.J., Doerschuk, P.C., Johnson, J.E.,
3-D Reconstructions of Tailed Bacteriophages from CYRO Electron Microscopy Images,
ICIP06(917-920).
IEEE DOI 0610
BibRef

Akselrod-Ballin, A., Bock, D., Reid, R.C., Warfield, S.K.,
Accelerating Image Registration With the Johnson-Lindenstrauss Lemma: Application to Imaging 3-D Neural Ultrastructure With Electron Microscopy,
MedImg(30), No. 7, July 2011, pp. 1427-1438.
IEEE DOI 1107
BibRef

Wang, Z., Millet, L.J., Mir, M., Ding, H., Unarunotai, S., Rogers, J.A., Gillette, M.U., Popescu, G.,
Spatial light interference microscopy (SLIM),
OptExp(19), No. 2, 2011, pp. 1016.
WWW Link.
WWW Link. 1109
BibRef

Babacan, D., Wang, Z., Do, M., opescu, G.,
Cell imaging beyond the diffraction limit using sparse deconvolution spatial light interference microscopy,
BioOptExp(2), No. 7, 2011.
WWW Link. 1109
BibRef

Pham, H., Ding, H., Sobh, N., Do, M., Patel, S., Popescu, G.,
Off-axis quantitative phase imaging processing using CUDA: Toward real-time applications,
BioOptExp(2), No. 7, 2011.
WWW Link. 1109
BibRef

Lucchi, A., Smith, K., Achanta, R., Knott, G., Fua, P.,
Supervoxel-Based Segmentation of Mitochondria in EM Image Stacks With Learned Shape Features,
MedImg(31), No. 2, February 2012, pp. 474-486.
IEEE DOI 1202
Electron Microscope BibRef

Chu, K.Q.[Kai-Qin], Smith, Z.J.[Zachary J.], Wachsmann-Hogiu, S.[Sebastian], Lane, S.[Stephen],
Super-resolved spatial light interference microscopy,
JOSA-A(29), No. 3, March 2012, pp. 344-351.
WWW Link. 1203
BibRef

Loménie, N.[Nicolas], Racoceanu, D.[Daniel],
Point set morphological filtering and semantic spatial configuration modeling: Application to microscopic image and bio-structure analysis,
PR(45), No. 8, August 2012, pp. 2894-2911.
Elsevier DOI 1204
Shape analysis; Mesh analysis; Unorganized point set; Spatial relation modeling; Mathematical morphological operator; Image exploration; Graph representation; Semantic query; Visual reasoning; Digital histopathology BibRef

Hermann, G.[Gilles], Coudray, N.[Nicolas], Buessler, J.L.[Jean-Luc], Caujolle-Bert, D.[Daniel], Rémigy, H.W.[Hervé-William], Urban, J.P.[Jean-Philippe],
ANIMATED-TEM: a toolbox for electron microscope automation based on image analysis,
MVA(23), No. 4, July 2012, pp. 691-711.
WWW Link. 1206
BibRef

Maiden, A.M., Humphry, M.J., Rodenburg, J.M.,
Ptychographic transmission microscopy in three dimensions using a multi-slice approach,
JOSA-A(29), No. 8, August 2012, pp. 1606-1614.
WWW Link. 1208
BibRef

Fehrenbach, J., Weiss, P., Lorenzo, C.,
Variational Algorithms to Remove Stationary Noise: Applications to Microscopy Imaging,
IP(21), No. 10, October 2012, pp. 4420-4430.
IEEE DOI 1209
BibRef

Fehrenbach, J., Weiss, P.,
Processing Stationary Noise: Model and Parameter Selection in Variational Methods,
SIIMS(7), No. 2, 2014, pp. 613-640.
DOI Link 1405
BibRef

Seelamantula, C.S.[Chandra Sekhar], Pavillon, N.[Nicolas], Depeursinge, C.[Christian], Unser, M.[Michael],
Local demodulation of holograms using the Riesz transform with application to microscopy,
JOSA-A(29), No. 10, October 2012, pp. 2118-2129.
WWW Link. 1210
BibRef

Benazzouz, M.[Mourtada], Baghli, I.[Ismahan], Chikh, M.A.[Med Amine],
Microscopic image segmentation based on pixel classification and dimensionality reduction,
IJIST(23), No. 1, March 2013, pp. 22-28.
DOI Link 1303
BibRef

Park, C.[Chiwoo], Huang, J.Z., Ji, J.X., Ding, Y.[Yu],
Segmentation, Inference and Classification of Partially Overlapping Nanoparticles,
PAMI(35), No. 3, March 2013, pp. 1.
IEEE DOI 1303
morphology process. BibRef

Histace, A., Meziou, L., Matuszewski, B.J., Precioso, F., Murphy, M.F., Carreiras, F.,
Statistical region based active contour using a fractional entropy descriptor: Application to nuclei cell segmentation in confocal microscopy images,
BMVA(2013), No. 1, 2013, pp. 5, 1-15.
PDF File. 1304
BibRef

Meziou, L.[Leila], Histace, A.[Aymeric], Precioso, F.[Frederic],
Statistical region-based active contour using optimization of alpha-divergence family for image segmentation,
ICIP14(6066-6070)
IEEE DOI 1502
Decision support systems BibRef

Meziou, L., Histace, A., Precioso, F., Matuszewski, B.J., Murphy, M.F.,
Confocal microscopy segmentation using active contour based on alpha(alpha)-divergence,
ICIP11(3077-3080).
IEEE DOI 1201
BibRef

Proenca, M.D.C.M.S., Nunes, J.F.M., de Matos, A.P.A.,
Automatic Virus Particle Selection: The Entropy Approach,
IP(22), No. 5, May 2013, pp. 1996-2003.
IEEE DOI 1304
Locate icosahedral virus particles in transmission electron microscopy images. BibRef

Smochina, C.[Cristian], Manta, V.[Vasile], Kropatsch, W.G.[Walter G.],
Crypts detection in microscopic images using hierarchical structures,
PRL(34), No. 8, June 2013, pp. 934-941.
Elsevier DOI 1305
BibRef
Earlier:
Semantic Segmentation of Microscopic Images Using a Morphological Hierarchy,
CAIP11(I: 102-109).
Springer DOI 1109
Crypt segmentation; Morphological hierarchy; Morphological pyramid; Biomedical imaging; Pathology; Microscopy BibRef

Kumar, V.,
Orientation Imaging Microscopy With Optimized Convergence Angle Using CBED Patterns in TEMs,
IP(22), No. 7, 2013, pp. 2637-2645.
IEEE DOI 1307
electron diffraction; orientation imaging microscopy BibRef

Bostan, E., Kamilov, U.S., Nilchian, M., Unser, M.,
Sparse Stochastic Processes and Discretization of Linear Inverse Problems,
IP(22), No. 7, 2013, pp. 2699-2710.
IEEE DOI 1307
X-ray microscopy; magnetic resonance imaging BibRef

Chao, J.[Jerry], Ram, S.[Sripad], Ober, R.[Raimund], Ward, E.S.[E. Sally],
Low-light imaging method provides highly accurate molecule localization,
SPIE(Newsroom), June 24, 2013
DOI Link 1307
Imaging technique estimates the location of individual particles with nearly the same accuracy that is achievable only in the absence of detector noise and pixelation. BibRef

Maire, G.[Guillaume], Ruan, Y.[Yi], Zhang, T.[Ting], Chaumet, P.C.[Patrick C.], Giovannini, H.[Hugues], Sentenac, D.[Daniel], Talneau, A.[Anne], Belkebir, K.[Kamal], Sentenac, A.[Anne],
High-resolution tomographic diffractive microscopy in reflection configuration,
JOSA-A(30), No. 10, October 2013, pp. 2133-2139.
WWW Link. 1310
BibRef

Venkatakrishnan, S.V., Drummy, L.F., Jackson, M.A., De Graef, M., Simmons, J., Bouman, C.A.,
A Model Based Iterative Reconstruction Algorithm For High Angle Annular Dark Field-Scanning Transmission Electron Microscope (HAADF-STEM) Tomography,
IP(22), No. 11, 2013, pp. 4532-4544.
IEEE DOI 1310
biology computing BibRef

Wang, H.B.[Hong-Bin], Miller, P.C.,
Scaled Heavy-Ball Acceleration of the Richardson-Lucy Algorithm for 3D Microscopy Image Restoration,
IP(23), No. 2, February 2014, pp. 848-854.
IEEE DOI 1402
deconvolution BibRef

Trattner, S.[Sigal], Kashdan, E.[Eugene], Feigin, M.[Micha], Sochen, N.A.[Nir A.],
Image formation of thick three-dimensional objects in differential-interference-contrast microscopy,
JOSA-A(31), No. 5, May 2014, pp. 968-980.
DOI Link 1405
Image formation theory; Microscopy; Scattering BibRef

Ghita, O., Dietlmeier, J., Whelan, P.F.,
Automatic Segmentation of Mitochondria in EM Data Using Pairwise Affinity Factorization and Graph-Based Contour Searching,
IP(23), No. 10, October 2014, pp. 4576-4586.
IEEE DOI 1410
biomembranes BibRef

Dietlmeier, J.[Julia], Ghita, O.[Ovidiu], Whelan, P.F.[Paul F.],
On the projection similarity in line grouping,
PRL(51), No. 1, 2015, pp. 50-56.
Elsevier DOI 1412
Line grouping BibRef

Rieger, B., Nieuwenhuizen, R., Stallinga, S.,
Image Processing and Analysis for Single-Molecule Localization Microscopy: Computation for nanoscale imaging,
SPMag(32), No. 1, January 2015, pp. 49-57.
IEEE DOI 1502
fluorescence BibRef

Gultekin, T., Koyuncu, C.F., Sokmensuer, C., Gunduz-Demir, C.,
Two-Tier Tissue Decomposition for Histopathological Image Representation and Classification,
MedImg(34), No. 1, January 2015, pp. 275-283.
IEEE DOI 1502
biological organs BibRef

Bal, U.[Ufuk], Engin, M.[Mehmet], Utzinger, U.[Urs],
A multiresolution approach for enhancement and denoising of microscopy images,
SIViP(9), No. 4, May 2015, pp. 787-799.
WWW Link. 1504
BibRef

Merola, F., Memmolo, P., Miccio, L., Bianco, V., Paturzo, M., Ferraro, P.,
Diagnostic Tools for Lab-on-Chip Applications Based on Coherent Imaging Microscopy,
PIEEE(103), No. 2, February 2015, pp. 192-204.
IEEE DOI 1504
Biomedical optical imaging BibRef

Becker, C., Christoudias, C.M., Fua, P.,
Domain Adaptation for Microscopy Imaging,
MedImg(34), No. 5, May 2015, pp. 1125-1139.
IEEE DOI 1505
Boosting BibRef

Nellros, F.[Frida], Thurley, M.J.[Matthew J.], Jonsson, H.[Hĺkan], Andersson, C.[Charlotte], Forsmo, S.P.E.[Seija P.E.],
Automated measurement of sintering degree in optical microscopy through image analysis of particle joins,
PR(48), No. 11, 2015, pp. 3451-3465.
Elsevier DOI 1506
Image analysis BibRef

Zuo, C.[Chao],
Computational phase imaging for light microscopes,
SPIE(Newsroom), November 4, 2015
DOI Link 1511
A combination of optics coding and digital processing enhances the capabilities of traditional light microscopes, enabling acquisition of information such as phase, which cannot otherwise be captured. BibRef

Moser, C.[Christophe], Loterie, D.[Damien],
Digital confocal microscopy through a multimode fiber,
SPIE(Newsroom), October 16, 2015
DOI Link 1511
Compensating for modal scrambling during illumination and detection enables the use of multimode fibers to transmit high-contrast, confocal images for endoscopic applications. BibRef

Cohen, E.A.K., Kim, D., Ober, R.J.,
Cramer-Rao Lower Bound for Point Based Image Registration With Heteroscedastic Error Model for Application in Single Molecule Microscopy,
MedImg(34), No. 12, December 2015, pp. 2632-2644.
IEEE DOI 1601
affine transforms BibRef

Yukihara, E.G., Foiez Ahmed, M.,
Pixel Bleeding Correction in Laser Scanning Luminescence Imaging Demonstrated Using Optically Stimulated Luminescence,
MedImg(34), No. 12, December 2015, pp. 2506-2517.
IEEE DOI 1601
aluminium compounds BibRef

Verrier, N.[Nicolas], Fournier, C.[Corinne], Cazier, A.[Anthony], Fournel, T.[Thierry],
Co-design of an in-line holographic microscope with enhanced axial resolution: Selective filtering digital holography,
JOSA-A(33), No. 1, January 2016, pp. 107-116.
DOI Link 1601
Image reconstruction techniques BibRef

Bostan, E.[Emrah], Froustey, E.[Emmanuel], Nilchian, M., Sage, D.[Daniel], Unser, M.[Michael],
Variational Phase Imaging Using the Transport-of-Intensity Equation,
IP(25), No. 2, February 2016, pp. 807-817.
IEEE DOI 1601
Image reconstruction BibRef

Bostan, E.[Emrah], Froustey, E.[Emmanuel], Rappaz, B.[Benjamin], Shaffer, E.[Etienne], Sage, D.[Daniel], Unser, M.[Michael],
Phase retrieval by using transport-of-intensity equation and differential interference contrast microscopy,
ICIP14(3939-3943)
IEEE DOI 1502
Equations BibRef

Wang, Y.F.[Yun-Feng], Kilpatrick, J.I.[Jason I.], Jarvis, S.P.[Suzanne P.], Boland, F.M.[Francis M.], Kokaram, A.[Anil], Corrigan, D.[David],
Double-Tip Artifact Removal From Atomic Force Microscopy Images,
IP(25), No. 6, June 2016, pp. 2774-2788.
IEEE DOI 1605
Deconvolution BibRef

Yu, Z.[Zhixian], Prasad, S.[Sudhakar],
High-numerical-aperture microscopy with a rotating point spread function,
JOSA-A(33), No. 7, July 2016, pp. B58-B69.
DOI Link 1608
Image analysis BibRef

Passon, O.[Oliver], Grebe-Ellis, J.[Johannes],
Note on the classification of super-resolution in far-field microscopy and information theory,
JOSA-A(33), No. 7, July 2016, pp. B31-B35.
DOI Link 1608
Fourier optics and signal processing BibRef

Gopakumar, G., Babu, K.H.[K. Hari], Mishra, D.[Deepak], Gorthi, S.S.[Sai Siva], Subrahmanyam, G.R.K.S.[Gorthi. R. K. Sai],
Cytopathological image analysis using deep-learning networks in microfluidic microscopy,
JOSA-A(34), No. 1, January 2017, pp. 111-121.
DOI Link 1701
Digital image processing BibRef

Yoshida, S.[Shunsuke],
Novel glasses-free tabletop 3D imaging technology for collaborative applications,
SPIE(Newsroom), February 2, 2017
DOI Link 1703
BibRef

Simsek, B.[Burcin], Iyengar, S.[Satish],
On the Distribution of Photon Counts with Censoring in Two-Photon Laser Scanning Microscopy,
JMIV(58), No. 1, May 2017, pp. 47-56.
WWW Link. 1704
BibRef


Han, L., Yin, Z.,
Transferring Microscopy Image Modalities with Conditional Generative Adversarial Networks,
Microscopy17(851-859)
IEEE DOI 1709
Biology, Gallium nitride, Generators, Image segmentation, Interference, Microscopy, Visualization BibRef

Saponaro, P., Treible, W., Kolagunda, A., Chaya, T., Caplan, J., Kambhamettu, C., Wisser, R.,
DeepXScope: Segmenting Microscopy Images with a Deep Neural Network,
Microscopy17(843-850)
IEEE DOI 1709
Computer architecture, Image segmentation, Measurement, Microscopy, Three-dimensional displays, Training, Training, data BibRef

Bao, J., Fan, J., Hu, X., Wang, J., Wang, L.,
An effective consistency correction and blending method for camera-array-based microscopy imaging,
WSSIP17(1-5)
IEEE DOI 1707
Cameras, Distribution functions, Lenses, Lighting, Mathematical model, Microscopy, Camera Array, Consistency Correction, Illumination Compensation, Improved Alpha Blending, Response Function, Vignetting, Compensation BibRef

Koos, K.[Krisztian], Molnár, J.[József], Horvath, P.[Peter],
Pipette Hunter: Patch-Clamp Pipette Detection,
SCIA17(I: 172-183).
Springer DOI 1706
detect the tip of glass pipettes in microscopy images BibRef

Godehardt, M.[Michael], Schladitz, K.[Katja], Dietrich, S.[Sascha], Meyndt, R.[Renate], Schulz, H.[Haiko],
Segmentation of Collagen Fiber Bundles in 3D by Waterfall on Orientations,
ISMM17(447-454).
Springer DOI 1706
BibRef

Zelenka, C., Koch, R.,
Restoration of images with wavefront aberrations,
ICPR16(1388-1393)
IEEE DOI 1705
Adaptive optics, Fourier transforms, Image restoration, Microscopy, Optical distortion, Optical, imaging BibRef

Astola, L.[Laura],
Stain separation in digital bright field histopathology,
IPTA16(1-6)
IEEE DOI 1703
biological tissues BibRef

Ambikumar, A.S., Bailey, D.G., Gupta, G.S.,
Extending the depth of field in microscopy: A review,
ICVNZ16(1-6)
IEEE DOI 1701
Image fusion BibRef

Almutairi, Y., Cootes, T., Kadler, K.,
Analysing the Structure of Collagen Fibres in SBFSEM Images,
Microscopy16(1342-1349)
IEEE DOI 1612
BibRef

Roels, J.[Joris], De Vylder, J.[Jonas], Saeys, Y.[Yvan], Goossens, B.[Bart], Philips, W.[Wilfried],
Decreasing Time Consumption of Microscopy Image Segmentation Through Parallel Processing on the GPU,
ACIVS16(147-159).
Springer DOI 1611
BibRef

Akram, S.U., Kannala, J., Eklund, L., Heikkilä, J.,
Cell proposal network for microscopy image analysis,
ICIP16(3199-3203)
IEEE DOI 1610
Feature extraction BibRef

Zou, Y., Li, C., Shirahama, K., Jiang, T., Grzegorzek, M.,
Environmental microorganism image retrieval using multiple colour channels fusion and particle swarm optimisation,
ICIP16(2475-2479)
IEEE DOI 1610
Feature extraction BibRef

Cossairt, O., He, K., Shang, R., Matsuda, N., Sharma, M., Huang, X., Katsaggelos, A., Spinoulas, L., Yoo, S.,
Compressive reconstruction for 3D incoherent holographic microscopy,
ICIP16(958-962)
IEEE DOI 1610
Coherence BibRef

Khan, M.B., Nisar, H., Ng, C.A., Lo, P.K.,
A Vignetting Correction Algorithm for Bright-Field Microscopic Images of Activated Sludge,
DICTA16(1-4)
IEEE DOI 1701
BibRef
Earlier:
Illumination Compensated Segmentation of Microscopic Images of Activated Sludge Flocs,
DICTA15(1-5)
IEEE DOI 1603
Gaussian distribution BibRef

Corredor, G.[German], Romero, E.[Eduardo],
Learning histopathological regions of interest by fusing bottom-up and top-down information,
ICIP15(3200-3204)
IEEE DOI 1512
Histopathology BibRef

Kim, D.W.[Dae Woo], Comer, M.L.[Mary L.],
Channel detection in microscope images of materials using marked point process modeling,
ICIP15(3054-3058)
IEEE DOI 1512
Channel detection; Marked Point Process; Segmentation BibRef

Maska, M.[Martin], Ederra, C.[Cristina], Fernandez-Marques, J.[Javier], Munoz-Barrutia, A.[Arrate], Kozubek, M.[Michal], Ortiz-de-Solorzano, C.[Carlos],
Quantification of the 3D collagen network geometry in confocal reflection microscopy,
ICIP15(1791-1794)
IEEE DOI 1512
Collagen network geometry BibRef

Xu, N.[Nan], Doerschuk, P.C.[Peter C.],
Reconstruction for stochastic 3-D signals with symmetric statistics in noise: Electron microscopy of virus particles,
ICIP15(1444-1447)
IEEE DOI 1512
cryo electron microscopy BibRef

Kharma, N.[Nawwaf], Ebne-Alian, M.[Mohammad], Charbonneau, L.[Louis],
Evolution of Programs for Segmentation of Microscopic Images,
CRV15(253-260)
IEEE DOI 1507
Atmospheric measurements BibRef

Jorstad, A.[Anne], Fua, P.[Pascal],
Refining Mitochondria Segmentation in Electron Microscopy Imagery with Active Surfaces,
NORDIA14(367-379).
Springer DOI 1504
BibRef

Kromwijk, S.[Sander], Lefkimmiatis, S.[Stamatios], Unser, M.[Michael],
High-performance 3D deconvolution of fluorescence micrographs,
ICIP14(1718-1722)
IEEE DOI 1502
Deconvolution BibRef

Lukes, T.[Tomas], Kehrt, D.[Daniel], Fliegel, K.[Karel], Klima, M.[Milos],
Binarization of noisy microscopy images through signal reconstruction using iterative detection network,
ICIP14(3949-3952)
IEEE DOI 1502
Cameras BibRef

Svoboda, D.[David], Ulman, V.[Vladimir], Matyska, L.[Ludek], Maska, M.[Martin], Bella, J.[Jan], Stejskal, S.[Stanislav],
On proper simulation of phenomena influencing image formation in fluorescence microscopy,
ICIP14(3944-3948)
IEEE DOI 1502
Biological system modeling BibRef

Seelamantula, C.S.[Chandra Sekhar], Shenoy, B.A.[Basty Ajay], Coquoz, S.[Severine], Lasser, T.[Theo],
Exact reconstruction in Quantitative Phase Microscopy,
ICIP14(3934-3938)
IEEE DOI 1502
Fourier transforms BibRef

Soubies, E.[Emmanuel], Blanc-Feraud, L.[Laure], Schaub, S.[Sebastien], Aubert, G.[Gilles],
Sparse reconstruction from Multiple-Angle Total Internal Reflection fluorescence Microscopy,
ICIP14(2844-2848)
IEEE DOI 1502
Approximation methods BibRef

Chen, K.C.J.[Kuan-Chieh Jackie], Yang, G.[Ge], Kovacevic, J.[Jelena],
Spatial density estimation based segmentation of super-resolution localization microscopy images,
ICIP14(867-871)
IEEE DOI 1502
Estimation BibRef

Ishaq, O.[Omer], Elf, J.[Johan], Wahlby, C.[Carolina],
An Evaluation of the Faster STORM Method for Super-resolution Microscopy,
ICPR14(4435-4440)
IEEE DOI 1412
Microscopy BibRef

Martinez-Corral, M., Llavador, A., Sanchez-Ortiga, E., Saavedra, G.,
Time-multiplexing Integral Microscopy,
3DTV-CON14(1-4)
IEEE DOI 1409
cameras BibRef

Oliveira, L.M.[Lucas M.], Herman, G.T.[Gabor T.], Kong, T.Y.[Tat Yung], Gottlieb, P.[Paul], Katz, A.[Al],
Using a Topological Descriptor to Investigate Structures of Virus Particles,
IWCIA14(62-75).
Springer DOI 1405
BibRef

Fan, Y.L.[Yi-Lun], Gal, Y., Bradley, A.P.,
Performance Analysis of Three Microscope Slide Scanning Techniques,
DICTA13(1-6)
IEEE DOI 1402
biomedical optical imaging BibRef

Li, H.[Hui], Chen, Y.Q.[Yan Qiu],
Automatic 3D reconstruction of mitochondrion with local intensity distribution signature and shape feature,
ICIP13(596-600)
IEEE DOI 1402
Clustering algorithms BibRef

Lee, H.G.[Hyun-Gyu], Choi, M.K.[Min-Kook], Lee, S.C.[Sang-Chul],
Grain-oriented segmentation of scanning electron microscope images,
ICIP13(4029-4033)
IEEE DOI 1402
Nanostructures;Ti foil;anodization;grain structure;image segmentation BibRef

Ho, D.J., Fu, C., Salama, P.[Paul], Dunn, K.W.[Kenneth W.], Delp, E.J.[Edward J.],
Nuclei Segmentation of Fluorescence Microscopy Images Using Three Dimensional Convolutional Neural Networks,
Microscopy17(834-842)
IEEE DOI 1709
Electron microscopy, Fluorescence, Image segmentation, Three-dimensional displays, Training, Two, dimensional, displays BibRef

Lorenz, K.S.[Kevin S.], Salama, P.[Paul], Dunn, K.W.[Kenneth W.], Delp, E.J.[Edward J.],
Three dimensional segmentation of fluorescence microscopy images using active surfaces,
ICIP13(1153-1157)
IEEE DOI 1402
Active contours BibRef

Ramesh, N.[Nisha], Otsuna, H.[Hideo], Tasdizen, T.[Tolga],
Three-dimensional alignment and merging of confocal microscopy stacks,
ICIP13(1447-1450)
IEEE DOI 1402
Confocal Microscopy BibRef

Altinay, D.[Doreen], Bradley, A.P.[Andrew P.],
Illumination Effects in Quantitative Virtual Microscopy,
CAIP13(II:449-456).
Springer DOI 1311
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Rana, M.S., Pota, H.R., Petersen, I.R.,
High performance control of atomic force microscope for high-speed image scanning,
ICARCV12(1187-1192).
IEEE DOI 1304
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Kemmler, M.[Michael], Denzler, J.[Joachim],
Finding discriminative features for Raman spectroscopy,
ICPR12(1823-1826).
WWW Link. 1302
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Liu, T.[Ting], Zhang, M.M.[Miao-Miao], Javanmardi, M.[Mehran], Ramesh, N.[Nisha], Tasdizen, T.[Tolga],
SSHMT: Semi-supervised Hierarchical Merge Tree for Electron Microscopy Image Segmentation,
ECCV16(I: 144-159).
Springer DOI 1611
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Liu, T.[Ting], Seyedhosseini, M.[Mojtaba], Ellisman, M.[Mark], Tasdizen, T.[Tolga],
Watershed merge forest classification for electron microscopy image stack segmentation,
ICIP13(4069-4073)
IEEE DOI 1402
Machine learning BibRef

Liu, T.[Ting], Jurrus, E.[Elizabeth], Seyedhosseini, M.[Mojtaba], Ellisman, M.[Mark], Tasdizen, T.[Tolga],
Watershed merge tree classification for electron microscopy image segmentation,
ICPR12(133-137).
WWW Link. 1302
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Ponti, M.P.[Moacir P.],
Improving restoration of microscopy images using iterative prototypes and a sequence of support constraints,
ICIP12(3065-3068).
IEEE DOI 1302
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Bhadouria, V.S.[Vivek Singh], Ghoshal, D.[Dibyendu],
Edge detection in electron microscopy biological images using statistical dispersion,
IMVIP12(96-100).
IEEE DOI 1302
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Lou, X.H.[Xing-Hua], Fiaschi, L.[Luca], Koethe, U.[Ullrich], Hamprecht, F.A.[Fred A.],
Quality Classification of Microscopic Imagery with Weakly Supervised Learning,
MLMI12(176-183).
Springer DOI 1211
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Cao, T.[Tian], Zach, C.[Christopher], Modla, S.[Shannon], Powell, D.[Debbie], Czymmek, K.[Kirk], Niethammer, M.[Marc],
Registration for Correlative Microscopy Using Image Analogies,
WBIR12(296-306).
Springer DOI 1208
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Altinay, D., Bradley, A.P.,
An Evaluation of Multi-resolution Microscope Slide Scanning Algorithms,
DICTA11(319-324).
IEEE DOI 1205
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Pietschmann, J.F.[Jan-Frederik], Schlake, B.[Barbel],
Lane formation in a microscopic model and the corresponding partial differential equation,
MSVALC11(173-179).
IEEE DOI 1201
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Kim, H.C.[Hee-Chang], Stamon, G.[Georges], Genovesio, A.[Auguste],
A method for discontinuous neurite reconstruction based on diffusion tensor, Hessian eigenvector, and diffused gradient vector fields,
ICIP11(1401-1404).
IEEE DOI 1201
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Burton, D.R., Murphy, M.F., Lilley, F., Gdeisat, M.A.,
The formulation of a non-linear hertzian model in order to assess the mechanical strength of human cells based on data from an atomic force microscope,
ICIP11(3061-3064).
IEEE DOI 1201
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Ahtaiba, A., Gdeisat, M.A., Burton, D.R., Lilley, F., Murphy, M.F., Johnston, G.,
A novel technique for the restoration of atomic force microscope images enabling an approximation of AFM impulse response,
ICIP11(3065-3068).
IEEE DOI 1201
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Johnston, G., Burton, D.R., Lilley, F., Doyle, A., Murphy, M.F., Madden, G., Gdeisat, M.A., Moore, C.J., Marchant, T.E., Matuszewski, B.,
Analysis of microscopy and reconstructive images for applications in medicine and biology,
ICIP11(3069-3072).
IEEE DOI 1201
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Pop, S.[Sorin], Dufour, A.[Alexandre], Olivo-Marin, J.C.[Jean-Christophe],
Image filtering using anisotropic structure tensor for cell membrane enhancement in 3D microscopy,
ICIP11(2041-2044).
IEEE DOI 1201
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Makkapati, V.V.[Vishnu V.], Pathangay, V.,
Adaptive Color Illumination for Microscopes,
NCC11(1-5).
IEEE DOI BibRef 1100

Yang, H.F.[Huei-Fang], Choe, Y.[Yoonsuck],
An Interactive Editing Framework for Electron Microscopy Image Segmentation,
ISVC11(I: 400-409).
Springer DOI 1109
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Papa, J.P.[Joăo P.], Pereira, C.R.[Clayton R.], de Albuquerque, V.H.C.[Victor H.C.], Silva, C.C.[Cleiton C.], Falcăo, A.X.[Alexandre X.], Tavares, J.M.R.S.[Joăo Manuel R.S.],
Precipitates Segmentation from Scanning Electron Microscope Images through Machine Learning Techniques,
IWCIA11(456-468).
Springer DOI 1105
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Lalys, F.[Florent], Riffaud, L.[Laurent], Morandi, X.[Xavier], Jannin, P.[Pierre],
Surgical Phases Detection from Microscope Videos by Combining SVM and HMM,
MCV10(54-62).
Springer DOI 1009
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Altinay, D.[Doreen], Bradley, A.P.[Andrew P.], Mehnert, A.J.H.[Andrew J.H.],
On the Estimation of Extrinsic and Intrinsic Parameters of Optical Microscope Calibration,
DICTA10(190-195).
IEEE DOI 1012
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Yang, H.F.[Huei-Fang], Choe, Y.S.[Yoon-Suck],
Ground Truth Estimation by Maximizing Topological Agreements in Electron Microscopy Data,
ISVC11(I: 371-380).
Springer DOI 1109
BibRef
Earlier:
Electron Microscopy Image Segmentation with Graph Cuts Utilizing Estimated Symmetric Three-Dimensional Shape Prior,
ISVC10(II: 322-331).
Springer DOI 1011
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Suksmono, A.B.[Andriyan B.], Hirose, A.[Akira],
Numerical reconstruction of holographic microscopy images based on matching pursuits on a pair of domains,
ICIP10(4197-4200).
IEEE DOI 1009
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Zhang, X.[Xin], Lam, E.Y.[Edmund Y.],
Edge detection of three-dimensional objects by manipulating pupil functions in an optical scanning holography system,
ICIP10(3661-3664).
IEEE DOI 1009
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Wortmann, T.[Tim], Fatikow, S.[Sergej],
Carbon Nanotube Detection by Scanning Electron Microscopy,
MVA09(370-).
PDF File. 0905
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Díaz, G.[Gloria], Romero, E.[Eduardo],
Histopathological Image Classification Using Stain Component Features on a pLSA Model,
CIARP10(55-62).
Springer DOI 1011
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Usenik, P.[Peter], Vrtovec, T.[Tomaz], Pernus, F.[Franjo], Likar, B.[Bostjan],
Automated Tracking of Vesicles in Phase Contrast Microscopy Images,
ICPR10(2520-2523).
IEEE DOI 1008
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Kemmler, M.[Michael], Denzler, J.[Joachim], Rösch, P.[Petra], Popp, J.[Jürgen],
Classification of Microorganisms via Raman Spectroscopy Using Gaussian Processes,
DAGM10(81-90).
Springer DOI 1009
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Mele, K.[Katarina], Coster, A.[Adelle], Burchfield, J.G.[James G.], Lopez, J.[Jamie], James, D.E.[David E.], Hughes, W.E.[William E.], Vallotton, P.[Pascal],
Automatic identification of fusion events in TIRF microscopy image sequences,
ObjectEvent09(578-584).
IEEE DOI 0910
BibRef

Adeyemi, A.A., Darcie, T.E.,
Programmable Point-Source Digital In-Line Holographic Microscope with Enhanced Field of View,
CISP09(1-4).
IEEE DOI 0910
BibRef

Marim, M.M.[Marcio M.], Angelini, E.D.[Elsa D.], Olivo-Marin, J.C.,
Compressed Sensing in microscopy with random projections in the Fourier domain,
ICIP09(2121-2124).
IEEE DOI 0911
BibRef

Gadgil, N.J., Salama, P., Dunn, K.W., Delp, E.J.,
Nuclei segmentation of fluorescence microscopy images based on midpoint analysis and marked point process,
Southwest16(37-40)
IEEE DOI 1605
Biology BibRef

Lorenz, K.S.[Kevin S.], Serrano, F.[Francisco], Salama, P.[Paul], Delp, E.J.[Edward J.],
Segmentation and registration based analysis of microscopy images,
ICIP09(4213-4216).
IEEE DOI 0911
BibRef

Wurflinger, T.[Thomas], Sechi, A.S.[Antonio S.], Aach, T.[Til],
Segmentation, tracking, and analysis of focal adhesion dynamics in cellular microscopy imaging,
ICIP09(4209-4212).
IEEE DOI 0911
BibRef

Zhao, Y.[Yang], Xiong, H.[Hongkai], Zhang, K.[Kai], Zhou, X.B.[Xiao-Bo],
Equilibrium modeling for 3D curvilinear structure tracking of confocal microscopy images,
ICIP09(2533-2536).
IEEE DOI 0911
BibRef

Misiak, D.[Danny], Posch, S.[Stefan], Stohr, N.[Nadine], Huttelmaier, S.[Stefan], Moller, B.[Birgit],
Automatic analysis of flourescence labeled neurites in microscope images,
WACV09(1-7).
IEEE DOI 0912
BibRef

Rong, W.[Wen], Chen, H.[Hui], Liu, J.J.[Jia-Ju], Xu, Y.Y.[Yan-Yan], Haeusler, R.,
Mosaicing of microscope images based on SURF,
IVCNZ09(271-275).
IEEE DOI 0911
BibRef

Zhang, H.Z.[Huai-Zhong], Rodriguez, E.P.[E. Patricia], Morrow, P.J.[Philip J.], McClean, S.[Sally], Saetzler, K.[Kurt],
MCMC-Based Algorithm to Adjust Scale Bias in Large Series of Electron Microscopical Ultrathin Sections,
CAIP09(557-564).
Springer DOI 0909
BibRef

Zhang, H.Z.[Huai-Zhong], Morrow, P.J.[Philip J.], McClean, S.[Sally], Saetzler, K.[Kurt],
Contour Detection of Labelled Cellular Structures from Serial Ultrathin Electron Microscopy Sections using GAC and Prior Analysis,
IPTA08(1-7).
IEEE DOI 0811
BibRef

Vazquez, Y., Bravo, A., Mantilla, J., Alayon, M.,
Automatic Approach for Emulsions Stability Assessment in Microscope Images,
DICTA08(162-167).
IEEE DOI 0812
BibRef

Hamey, L.G.C.[Leonard G. C.], Connally, R.E.[Russell E.], Yen, S.W.T.[Simon Wong Too], Lawson, T.S.[Thomas S.], Piper, J.A.[James A.], Iredell, J.[Jon],
Luminescent Microspheres Resolved from Strong Background on an Automated Time-Gated Luminescence Microscopy Workstation,
DICTA09(223-228).
IEEE DOI 0912
BibRef

Alexander, S.K., Azencott, R., Bodmann, B.G., Bouamrani, A., Chiappini, C., Ferrari, M., Liu, X., Tasciotti, E.,
SEM Image Analysis for Quality Control of Nanoparticles,
CAIP09(590-597).
Springer DOI 0909
SEM: scanning electronic microscopy. BibRef

Tsaftaris, S.A., Zujovic, J., Katsaggelos, A.K.,
Automated line flattening of Atomic Force Microscopy images,
ICIP08(2968-2971).
IEEE DOI 0810
BibRef

Karlsson, A.[Adam], Overgaard, N.C.[Niels C.], Heyden, A.[Anders],
A Two-Step Area Based Method for Automatic Tight Segmentation of Zona Pellucida in HMC Images of Human Embryos,
ScaleSpace05(503-514).
Springer DOI 0505
BibRef
And:
Automatic segmentation of Zona pellucida in HMC images of human embryos,
ICPR04(III: 518-521).
IEEE DOI 0409
Hoffman modulation contrast microscopy BibRef

van Kempen, G.M.P., van den Brink, N., van Vliet, L.J., van Ginkel, M., Verbeek, P.W., Blonk, H.,
The Application of a Local Dimensionality Estimator to the Analysis of 3-D Microscopic Network Structures,
SCIA99(Biological Applications II). BibRef 9900

Brugal, G.,
Pattern recognition, image processing, related data analysis and expert systems integrated in medical microscopy,
ICPR88(I: 286-293).
IEEE DOI 8811
BibRef

Chapter on Medical Applications, CAT, MRI, Ultrasound, Heart Models, Brain Models continues in
Medical Image Analysis, Special Issues, Introductions, Special Sections .


Last update:Nov 18, 2017 at 20:56:18