20.4.2.5 Tracking Cells, Deformations, Motion, Real-Time Analysis

Chapter Contents (Back)
Cells. Cell Tracking.

Wu, K., Gauthier, D., and Levine, M.,
Live cell image segmentation,
BiomedEng(42), No. 1, 1995, pp. 1-12. BibRef 9500

Cavallo, A., Solovei, I., Schermeleh, L., Heintzmann, R., Cremer, T., Cremer, C.,
A Hybrid Approach to the 3D High Precision Position Measurement and Particle Tracking in Human Cell Nuclei,
RealTimeImg(8), No. 6, December 2002, pp. 467-473.
WWW Link. 0304
BibRef

Debeir, O., VanHam, P., Kiss, R., Decaestecker, C.,
Tracking of Migrating Cells Under Phase-Contrast Video Microscopy With Combined Mean-Shift Processes,
MedImg(24), No. 6, June 2005, pp. 697-711.
IEEE Abstract. 0506
BibRef

Matula, P., Kozubek, M., Dvorak, V.,
Fast Point-Based 3-D Alignment of Live Cells,
IP(15), No. 8, August 2006, pp. 2388-2396.
IEEE DOI 0606
BibRef

Ayala, G.[Guillermo], Sebastian, R.[Rafael], Díaz, M.E.[María Elena], Díaz, E.[Ester], Zoncu, R.[Roberto], Toomre, D.[Derek],
Analysis of Spatially and Temporally Overlapping Events with Application to Image Sequences,
PAMI(28), No. 10, October 2006, pp. 1707-1712.
IEEE DOI 0609
Analysis of cells. See also Studying endocytosis in space and time by means of temporal Boolean models. BibRef

Díaz, E.[Ester], Sebastian, R.[Rafael], Ayala, G.[Guillermo], Díaz, M.E.[María Elena], Zoncu, R.[Roberto], Toomre, D.[Derek], Gasman, S.[Stéphane],
Measuring Spatiotemporal Dependencies in Bivariate Temporal Random Sets with Applications to Cell Biology,
PAMI(30), No. 9, September 2008, pp. 1659-1671.
IEEE DOI 0808
Interdependency of proteins. BibRef

Bhaskar, H.[Harish], Singh, S.[Sameer],
Live cell imaging: a computational perspective,
RealTimeIP(1), No. 3, April 2007, pp. 195-212.
Springer DOI 0001
BibRef

Zhang, B., Fadili, J.M., Starck, J.L., Olivo-Marin, J.C.,
Multiscale Variance-Stabilizing Transform for Mixed-Poisson-Gaussian Processes and its Applications in Bioimaging,
ICIP07(VI: 233-236).
IEEE DOI 0709
BibRef

Genovesio, A., Zhang, B., Olivo-Marin, J.C.,
Tracking of multiple fluorescent biological objects in three dimensional video microscopy,
ICIP03(I: 1105-1108).
IEEE DOI 0312
BibRef

Moon, I., Daneshpanah, M., Javidi, B., Stern, A.,
Automated Three-Dimensional Identification and Tracking of Micro/Nanobiological Organisms by Computational Holographic Microscopy,
PIEEE(97), No. 6, June 2009, pp. 990-1010.
IEEE DOI 0905
BibRef

Sargin, M.E., Altinok, A., Manjunath, B.S., Rose, K.,
Variable Length Open Contour Tracking Using a Deformable Trellis,
IP(20), No. 4, April 2011, pp. 1023-1035.
IEEE DOI 1103
BibRef
Earlier: A1, A2, A4, A3:
Tracing Curvilinear Structures in Live Cell Images,
ICIP07(VI: 285-288).
IEEE DOI 0709
BibRef

Sargin, M.E., Ghosh, P., Manjunath, B.S., Rose, K.,
Object Tracking with Ratio Cycles Using Shape and Appearance Cues,
ICPR10(3649-3652).
IEEE DOI 1008
BibRef

Koulgi, P.[Pradeep], Sargin, M.E.[Mehmet Emre], Rose, K.[Kenneth], Manjunath, B.S.,
Graphical Model-Based Tracking of Curvilinear Structures in Bio-image Sequences,
ICPR10(2596-2599).
IEEE DOI 1008
BibRef

Dufour, A., Thibeaux, R., Labruyere, E., Guillen, N., Olivo-Marin, J.C.,
3-D Active Meshes: Fast Discrete Deformable Models for Cell Tracking in 3-D Time-Lapse Microscopy,
IP(20), No. 7, July 2011, pp. 1925-1937.
IEEE DOI 1107
BibRef

Suresh, R.M., Jayalakshmi, N.,
Segmentation and Tracking of Progenitor Cells in Time Lapse Microscopy,
IJIG(12), No. 1, January 2012, pp. 1250008.
DOI Link 1203
BibRef

van de Giessen, M., van der Laan, A., Hendriks, E.A., Vidorreta, M., Reiber, J.H.C., Jost, C.R., Tanke, H.J., Lelieveldt, B.P.F.[Boudewijn P. F.],
Fully Automated Attenuation Measurement and Motion Correction in FLIP Image Sequences,
MedImg(31), No. 2, February 2012, pp. 461-473.
IEEE DOI 1202
FLIP: Fluorescence loss in photobleaching BibRef

Sethuraman, V.[Vijaya], French, A.[Andrew], Wells, D.[Darren], Kenobi, K.[Kim], Pridmore, T.[Tony],
Tissue-level segmentation and tracking of cells in growing plant roots,
MVA(23), No. 4, July 2012, pp. 639-658.
WWW Link. 1206
BibRef

Kan, A.[Andrey], Leckie, C.[Christopher], Bailey, J.[James], Markham, J.[John], Chakravorty, R.[Rajib],
Measures for ranking cell trackers without manual validation,
PR(46), No. 11, November 2013, pp. 2849-2859.
Elsevier DOI 1306
Cell tracking; Data association; Tracking quality; Performance measures; Tracker selection; Bayes theorem BibRef

Kan, A.[Andrey], Markham, J.[John], Chakravorty, R.[Rajib], Bailey, J.[James], Leckie, C.[Christopher],
Ranking cell tracking systems without manual validation,
PRL(53), No. 1, 2015, pp. 38-43.
Elsevier DOI 1502
Cell tracking BibRef

Fasciano, T.[Thomas], Souvenir, R.[Richard], Shin, M.C.[Min C.],
Learning to rank biological motion trajectories,
IVC(31), No. 6-7, June-July 2013, pp. 502-510.
Elsevier DOI 1306
Biomedical imaging; Motion analysis; Cell motion; Rank-based learning BibRef

Möller, M.[Michael], Burger, M.[Martin], Dieterich, P.[Peter], Schwab, A.[Albrecht],
A framework for automated cell tracking in phase contrast microscopic videos based on normal velocities,
JVCIR(25), No. 2, 2014, pp. 396-409.
Elsevier DOI 1402
Cell tracking BibRef

Liang, L.[Liang], Shen, H.Y.[Hong-Ying], de Camilli, P., Duncan, J.S.,
A Novel Multiple Hypothesis Based Particle Tracking Method for Clathrin Mediated Endocytosis Analysis Using Fluorescence Microscopy,
IP(23), No. 4, April 2014, pp. 1844-1857.
IEEE DOI 1404
Gaussian processes BibRef

Lou, X., Schiegg, M.[Martin], Hamprecht, F.A.[Fred A.],
Active Structured Learning for Cell Tracking: Algorithm, Framework, and Usability,
MedImg(33), No. 4, April 2014, pp. 849-860.
IEEE DOI 1404
Data models BibRef

Diego, F.[Ferran], Hamprecht, F.A.[Fred A.],
Structured Regression Gradient Boosting,
CVPR16(1459-1467)
IEEE DOI 1612
BibRef

Schiegg, M.[Martin], Diego, F.[Ferran], Hamprecht, F.A.[Fred A.],
Learning Diverse Models: The Coulomb Structured Support Vector Machine,
ECCV16(III: 585-599).
Springer DOI 1611
BibRef

Magnusson, K.E.G., Jalden, J., Gilbert, P.M., Blau, H.M.,
Global Linking of Cell Tracks Using the Viterbi Algorithm,
MedImg(34), No. 4, April 2015, pp. 911-929.
IEEE DOI 1504
Clustering algorithms BibRef

Rezatofighi, S.H., Gould, S., Vo, B.T.[Ba Tuong], Vo, B.N.[Ba-Ngu], Mele, K., Hartley, R.,
Multi-Target Tracking With Time-Varying Clutter Rate and Detection Profile: Application to Time-Lapse Cell Microscopy Sequences,
MedImg(34), No. 6, June 2015, pp. 1336-1348.
IEEE DOI 1506
Bayes methods BibRef

Reiter, M.[Michael], Rota, P.[Paolo], Kleber, F.[Florian], Diem, M.[Markus], Groeneveld-Krentz, S.[Stefanie], Dworzak, M.[Michael],
Clustering of cell populations in flow cytometry data using a combination of Gaussian mixtures,
PR(60), No. 1, 2016, pp. 1029-1040.
Elsevier DOI 1609
Gaussian mixture model BibRef

Chen, J., Alber, M.S., Chen, D.Z.,
A Hybrid Approach for Segmentation and Tracking of Myxococcus Xanthus Swarms,
MedImg(35), No. 9, September 2016, pp. 2074-2084.
IEEE DOI 1609
Active contours. BibRef

Tambo, A.L., Bhanu, B.,
Modeling and Classifying Tip Dynamics of Growing Cells in Video,
SPLetters(23), No. 10, October 2016, pp. 1369-1373.
IEEE DOI 1610
cellular biophysics BibRef

Tektonidis, M., Rohr, K.,
Diffeomorphic Multi-Frame Non-Rigid Registration of Cell Nuclei in 2D and 3D Live Cell Images,
IP(26), No. 3, March 2017, pp. 1405-1417.
IEEE DOI 1703
biomedical optical imaging BibRef

Liu, M.[Min], He, Y.[Yue], Wei, Y.L.[Yang-Liu], Xiang, P.[Peng],
Plant Cell Tracking Using Kalman Filter Based Local Graph Matching,
IVC(60), No. 1, 2017, pp. 154-161.
Elsevier DOI 1704
Cell tracking BibRef

He, T.[Tao], Mao, H.[Hua], Guo, J.X.[Ji-Xiang], Yi, Z.[Zhang],
Cell tracking using deep neural networks with multi-task learning,
IVC(60), No. 1, 2017, pp. 142-153.
Elsevier DOI 1704
Cell tracking BibRef

Türetken, E., Wang, X., Becker, C.J., Haubold, C., Fua, P.,
Network Flow Integer Programming to Track Elliptical Cells in Time-Lapse Sequences,
MedImg(36), No. 4, April 2017, pp. 942-951.
IEEE DOI 1704
Image segmentation BibRef

Liu, M., Wei, Y., Qian, W., Zhang, H.,
Robust Plant Cell Tracking in Noisy Image Sequences Using Optimal CRF Graph Matching,
SPLetters(24), No. 8, August 2017, pp. 1168-1172.
IEEE DOI 1708
biological techniques, biological tissues, biology computing, cellular biophysics, graph theory, image matching, image sequences, object tracking, spatiotemporal phenomena, conditional random field graph method, high-throughput spatiotemporal quantitative measurements, multicellular tissues, neighboring cells spatial topology, noisy image sequence, optimal CRF graph matching, robust plant cell tracking, second-order potential, time-lapse live-imaging datasets, tracking accuracy rate improvement, tracking error reduction, tracking stability enhancement, Image edge detection, Image segmentation, Labeling, Noise measurement, Pipelines, Shape, Tracking, Cell tracking, conditional random field, local graph matching, noisy, images BibRef

Sgouralis, I.[Ioannis], Nebenführ, A.[Andreas], Maroulas, V.[Vasileios],
A Bayesian Topological Framework for the Identification and Reconstruction of Subcellular Motion,
SIIMS(10), No. 2, 2017, pp. 871-899.
DOI Link 1708
BibRef

Wan, J.Q.[Jiu-Qing], Chen, X.[Xu], Zeng, X.H.[Xian-Hang],
Cell tracking via Structured Prediction and Learning,
MVA(28), No. 8, November 2017, pp. 859-874.
WWW Link. 1710
BibRef


Lai, Y., Kamata, S.i., Fu, Z.,
Robust registration of serial cell microscopic images using 3D Hilbert scan search,
MVA17(530-533)
DOI Link 1708
Adaptive optics, Feature extraction, Microscopy, Mutual information, Optical imaging, Robustness, Three-dimensional, displays BibRef

Jug, F.[Florian], Levinkov, E.[Evgeny], Blasse, C.[Corinna], Myers, E.W.[Eugene W.], Andres, B.[Bjoern],
Moral Lineage Tracing,
CVPR16(5926-5935)
IEEE DOI 1612
Track cells as they move and divide. BibRef

Matuszewski, D.J.[Damian J.], Sintorn, I.M.[Ida-Maria], Puigvert, J.C.[Jordi Carreras], Wählby, C.[Carolina],
Comparison of Flow Cytometry and Image-Based Screening for Cell Cycle Analysis,
ICIAR16(623-630).
Springer DOI 1608
BibRef

Cheng, J.R.[Jie-Rong], Xiong, W.[Wei], Gu, Y.[Ying], Chia, S.C.[Shue-Ching], Wang, Y.[Yue], Lim, J.H.[Joo-Hwee],
A Three-Color Coupled Level-Set Algorithm for Simultaneous Multiple Cell Segmentation and Tracking,
ACCV14(III: 268-283).
Springer DOI 1504
BibRef

Ramesh, N.[Nisha], Tasdizen, T.[Tolga],
Cell tracking using particle filters with implicit convex shape model in 4D confocal microscopy images,
ICIP14(446-450)
IEEE DOI 1502
Bayes methods BibRef

Chakraborty, A.[Anirban], Roy-Chowdhury, A.[Amit],
A conditional random field model for tracking in densely packed cell structures,
ICIP14(451-455)
IEEE DOI 1502
Feature extraction BibRef

McArdle, S.[Sara], Acton, S.T.[Scott T.], Ley, K.[Klaus], Ray, N.[Nilanjan],
Registering sequences of in vivo microscopy images for cell tracking using dynamic programming and minimum spanning trees,
ICIP14(3547-3551)
IEEE DOI 1502
Dynamic programming BibRef

Esteves, T.[Tiago], Carvalho, Â.[Ângela], Monteiro, F.J.[Fernando Jorge], Quelhas, P.[Pedro],
Periodic Background Pattern Detection and Removal for Cell Tracking,
ICIAR14(II: 123-131).
Springer DOI 1410
BibRef

Okabe, T., Hotta, K.,
Accuracy Improvement of Melanosome Tracking by Error Correction,
DICTA13(1-8)
IEEE DOI 1402
cellular biophysics BibRef

Kausler, B.X.[Bernhard X.], Schiegg, M.[Martin], Andres, B.[Bjoern], Lindner, M.[Martin], Koethe, U.[Ullrich], Leitte, H.[Heike], Wittbrodt, J.[Jochen], Hufnagel, L.[Lars], Hamprecht, F.A.[Fred A.],
A Discrete Chain Graph Model for 3d+t Cell Tracking with High Misdetection Robustness,
ECCV12(III: 144-157).
Springer DOI 1210
BibRef

Wang, Q.[Quan], Ou, Y.[Yan], Julius, A.A.[A. Agung], Boyer, K.L.[Kim L.], Kim, M.J.[Min Jun],
Tracking Tetrahymena pyriformis cells using decision trees,
ICPR12(1843-1847).
WWW Link. 1302
BibRef

Chowdhury, A.S.[Ananda S.], Paul, A.[Angshuman], Bunyak, F.[Filiz], Cornelison, D.D.W., Palaniappan, K.,
Semi-automated tracking of muscle satellite cells in brightfield microscopy video,
ICIP12(2825-2828).
IEEE DOI 1302
BibRef

Saha, U.[Utsab], Singh, R.[Rahul],
Vision-based Tracking of Complex Macroparasites for High-content Phenotypic Drug Screening,
ISVC12(II: 104-114).
Springer DOI 1209
BibRef

Mkrtchyan, K., Singh, D., Liu, M., Reddy, V., Roy-Chowdhury, A., Gopi, M.,
Efficient cell segmentation and tracking of developing plant meristem,
ICIP11(2165-2168).
IEEE DOI 1201
BibRef

Chowdhury, A.S.[Ananda S.], Chatterjee, R.[Rohit], Ghosh, M.[Mayukh], Ray, N.[Nilanjan],
Cell Tracking in Video Microscopy Using Bipartite Graph Matching,
ICPR10(2456-2459).
IEEE DOI 1008
BibRef

Iwanowski, M.[Marcin], Korzynska, A.[Anna],
Segmentation of Moving Cells in Bright Field and Epi-Fluorescent Microscopic Image Sequences,
ICCVG10(I: 401-410).
Springer DOI 1009
BibRef

Ong, L.L.S.[Lee-Ling S.], Ang, M.H.[Marcelo H.], Asada, H.H.[H. Harry],
Tracking of cell population from time lapse and end point confocal microscopy images with multiple hypothesis Kalman smoothing filters,
MMBIA10(71-78).
IEEE DOI 1006
BibRef

Thirusittampalam, K.[Ketheesan], Hossain, M.J.[M. Julius], Ghita, O.[Ovidiu], Whelan, P.F.[Paul F.],
A Novel Framework for Tracking In-vitro Cells in Time-lapse Phase Contrast Data,
BMVC10(xx-yy).
HTML Version. 1009
BibRef
Earlier:
Cellular Tracking in Time-Lapse Phase Contrast Images,
IMVIP09(77-82).
IEEE DOI 0909
BibRef

Mohamed, R.[Refaat], El-Baz, A.[Ayman], Navalta, J.[James],
Assessment of exercise-induced immune cell apoptosis using morphological image processing,
ICIP09(2649-2652).
IEEE DOI 0911
BibRef

Vallotton, P., Sun, C.M.[Chang-Ming], Wang, D.[Dadong], Turnbull, L., Whitchurch, C., Ranganathan, P.,
Segmentation and tracking individual Pseudomonas aeruginosa bacteria in dense populations of motile cells,
IVCNZ09(221-225).
IEEE DOI 0911
BibRef

Quelhas, P.[Pedro], Mendonça, A.M.[Ana Maria], Campilho, A.[Aurélio],
Optical Flow Based Arabidopsis Thaliana Root Meristem Cell Division Detection,
ICIAR10(II: 217-226).
Springer DOI 1006
BibRef

Marcuzzo, M.[Monica], Guichard, T.[Tiago], Quelhas, P.[Pedro], Mendonça, A.M.[Ana Maria], Campilho, A.[Aurélio],
Cell Division Detection on the Arabidopsis Thaliana Root,
IbPRIA09(168-175).
Springer DOI 0906
BibRef

Marcuzzo, M.[Monica], Quelhas, P.[Pedro], Campilho, A.[Ana], Mendonça, A.M.[Ana Maria], Campilho, A.[Aurélio],
A Hybrid Approach for Arabidopsis Root Cell Image Segmentation,
ICIAR08(xx-yy).
Springer DOI 0806
BibRef

Marcuzzo, M.[Monica], Quelhas, P.[Pedro], Mendonca, A.M.[Ana Maria], Campilho, A.[Aurelio],
Tracking of Arabidopsis thaliana root cells in time-lapse microscopy,
ICPR08(1-4).
IEEE DOI 0812
BibRef

Garcia, B.[Bernardo], Campilho, A.[Ana], Scheres, B.[Ben], Campilho, A.[Aurélio],
Automatic Tracking of Arabidopsis thaliana Root Meristem in Confocal Microscopy,
ICIAR04(II: 166-174).
Springer DOI 0409
BibRef

Nguyen, N.[Nhat], Keller, S.[Steve], Huynh, T.[Toan], Shin, M.[Min],
Tracking colliding cells,
WACV09(1-7).
IEEE DOI 0912
BibRef

Russell, C.[Christopher], Metaxas, D.N.[Dimitris N.], Restif, C.[Christophe], Torr, P.H.S.[Philip H.S.],
Using the Pn Potts model with learning methods to segment live cell images,
MMBIA07(1-8).
IEEE DOI 0710
BibRef

Nath, S.K.[Sumit K.], Bunyak, F.[Filiz], Palaniappan, K.[Kannappan],
Robust Tracking of Migrating Cells Using Four-Color Level Set Segmentation,
ACIVS06(920-932).
Springer DOI 0609
BibRef

Li, K.[Kang], Miller, E.D.[Eric D.], Weiss, L.E.[Lee E.], Campbell, P.G.[Phil G.], Kanade, T.[Takeo],
Online Tracking of Migrating and Proliferating Cells Imaged with Phase-Contrast Microscopy,
MMBIA06(65).
IEEE DOI 0609
BibRef

Yang, G.[Ge], Matov, A., Danuser, G.,
Reliable Tracking of Large Scale Dense Antiparallel Particle Motion for Fluorescence Live Cell Imaging,
BioInfo05(III: 138-138).
IEEE DOI 0507
BibRef

Kanade, T.[Takeo], Li, K.[Kang],
Tracking of Migrating and Proliferating Cells in Phase-Contrast Microscopy Imagery for Tissue Engineering,
CVBIA05(24-24).
Springer DOI 0601
BibRef

Ray, N., Dong, G., Acton, S.T.,
Tracking Multiple Cells by Correspondence Resolution in a Sequential Bayesian Framework,
ICIP05(I: 705-708).
IEEE DOI 0512
BibRef

McNally, J.G.,
Computational optical-sectioning microscopy for 3D quantification of cell motion: results and challenges,
ICIP94(III: 528-532).
IEEE DOI 9411
BibRef

Takagi, M.[Mikio], Sakaue, K.[Katsuhiko],
The Analysis of Moving Granules in a Pancreatic Cell by Digital Moving Image Processing,
ICPR78(735-739). BibRef 7800

Chapter on Medical Applications, CAT, MRI, Ultrasound, Heart Models, Brain Models continues in
Extraction and Analysis of Neurons .


Last update:Nov 11, 2017 at 13:31:57