20.4 Cell, DNA, Analysis and Extraction, Microarray

Chapter Contents (Back)
General analysis. DNA. Microarray Data.

Mullaney, P.F., Achatz, M., Seger, G., Heinze, W., Sinsel, F., Weiss, B., Mann, R.,
Models for low resolution slit scan measurements based on high resolution laser scanning image analysis: DNA and nuclear dimensions,
PR(13), No. 1, 1981, pp. 49-55.
WWW Link. 0309
BibRef

Klevecz, R.R.[Robert R.], Eccles, B.A.[Beverly A.],
Method and apparatus for automatic digital image analysis,
US_Patent4,724,543, Feb 9, 1988
WWW Link. BibRef 8802

Chiu, D.K.Y.[David K. Y.], Harauz, G.[George],
A method for inferring probabilistic consensus structure with applications to molecular sequence data,
PR(26), No. 4, April 1993, pp. 643-654.
WWW Link. 0401
RNA analysis. BibRef

Chiu, D.K.Y.,
A consensus structure inference algorithm,
CVPR91(755-756).
IEEE DOI 0403
BibRef

Liew, A.W.C.[Alan Wee-Chung], Yan, H.[Hong], Yang, M.[Mengsu],
Robust adaptive spot segmentation of DNA microarray images,
PR(36), No. 5, May 2003, pp. 1251-1254.
WWW Link. 0301
BibRef

Spirov, A.V.[Alexander V.], Kazansky, A.B.[Alexander B.], Timakin, D.L.[Dmitry L.], Reinitz, J.[John],
Reconstruction of the Dynamics of Drosophila Genes Expression from Sets of Images Sharing a Common Pattern,
RealTimeImg(8), No. 6, December 2002, pp. 507-518.
WWW Link. 0304
BibRef

Kagalwala, F., Kanade, T.,
Reconstructing specimens using DIC microscope images,
SMC-B(33), No. 5, October 2003, pp. 728-737.
IEEE Abstract. 0310
BibRef
Earlier:
Simulating DIC Microscope Images: From Physical Principles to a Computational Model,
PMCVG99(xx-yy). BibRef

Aracena, J., Lamine, S.B., Mermet, M.A., Cohen, O., Demongeot, J.,
Mathematical modeling in genetic networks: relationships between the genetic expression and both chromosomic breakage and positive circuits,
SMC-B(33), No. 5, October 2003, pp. 825-834.
IEEE Abstract. 0310
BibRef

Brändle, N.[Norbert], Bischof, H.[Horst], Lapp, H.[Hilmar],
Robust DNA microarray image analysis,
MVA(15), No. 1, October 2003, pp. 11-28.
Springer DOI 0310
BibRef
Earlier: A1, A3, A2:
Automatic Grid Fitting for Genetic Spot Array Images Containing Guide Spots,
CAIP99(357-366).
Springer DOI 9909
BibRef

Bajcsy, P.,
Gridline: Automatic Grid Alignment in DNA Microarray Scans,
IP(13), No. 1, January 2004, pp. 15-25.
IEEE DOI 0402
BibRef

Damiance, Jr., A.P.G.[Antonio P.G.], Zhao, L.[Liang], Carvalho, A.C.P.L.F.[Andre C.P.L.F.],
A dynamical model with adaptive pixel moving for microarray images segmentation,
RealTimeImg(10), No. 4, August 2004, pp. 189-195.
WWW Link. 0410
Gene expression analysis. BibRef

David, A.[Amit], Lerner, B.[Boaz],
Support vector machine-based image classification for genetic syndrome diagnosis,
PRL(26), No. 8, June 2005, pp. 1029-1038.
WWW Link. 0506
BibRef
Earlier:
Signal discrimination using a support vector machine for genetic syndrome diagnosis,
ICPR04(III: 490-493).
IEEE DOI 0409
BibRef

Blekas, K., Galatsanos, N.P., Likas, A., Lagaris, I.E.,
Mixture model analysis of DNA microarray images,
MedImg(24), No. 7, July 2005, pp. 901-909.
IEEE DOI 0508
BibRef

Marias, K., Ripoll, J., Meyer, H., Ntziachristos, V., Orphanoudakis, S.,
Image analysis for assessing molecular activity changes in time-dependent geometries,
MedImg(24), No. 7, July 2005, pp. 894-900.
IEEE DOI 0508
BibRef

Volkovich, Z., Kirzhner, V., Bolshoy, A., Nevo, E., Korol, A.,
The method of N-grams in large-scale clustering of DNA texts,
PR(38), No. 11, November 2005, pp. 1902-1912.
WWW Link. 0509
BibRef

Dougherty, E.R.[Edward R.],
The fundamental role of pattern recognition for gene-expression/microarray data in bioinformatics,
PR(38), No. 12, December 2005, pp. 2226-2228.
WWW Link. 0510
BibRef

Wang, H.Q.A.[Hong-Qi-Ang], Huang, D.S.[De-Shuang],
Regulation probability method for gene selection,
PRL(27), No. 2, 15 January 2006, pp. 116-122.
WWW Link. 0512
BibRef

Jacob, M., Blu, T., Vaillant, C., Maddocks, J.H., Unser, M.,
3-D Shape Estimation of DNA Molecules From Stereo Cryo-Electron Micro-Graphs Using a Projection-Steerable Snake,
IP(15), No. 1, January 2006, pp. 214-227.
IEEE DOI 0601
BibRef

Jacob, M., Blu, T., Unser, M.,
Shape estimation of 3-D DNA molecules from stereo cryo-electron micro-graphs,
ICIP04(III: 1883-1886).
IEEE DOI 0505
BibRef

Zhang, Q.[Qiong], Zhang, Y.S.[Ying-Sha],
Hierarchical clustering of gene expression profiles with graphics hardware acceleration,
PRL(27), No. 6, 15 April 2006, pp. 676-681.
WWW Link. Hierarchical clustering; Graphics processing units (GPUs); Gene expression profile; Microarray 0604
BibRef

Samavi, S., Shirani, S., Karimi, N.,
Real-Time Processing and Compression of DNA Microarray Images,
IP(15), No. 3, March 2006, pp. 754-766.
IEEE DOI 0604
BibRef

Jiao, S.H.[Shu-Hong], Goutte, R.[Robert],
Genetic coding of image on synthetic peptides,
IJIST(15), No. 3, 2005, pp. 168-171.
DOI Link 0510
BibRef

Mitra, S.[Sushmita], Banka, H.[Haider],
Multi-objective evolutionary biclustering of gene expression data,
PR(39), No. 12, December 2006, pp. 2464-2477.
WWW Link. 0609
Multi-objective optimization; Microarray; Genetic algorithms; Knowledge discovery BibRef

Adjeroh, D.A.[Donald A.], Zhang, Y.[Yong], Parthe, R.[Rahul],
On denoising and compression of DNA microarray images,
PR(39), No. 12, December 2006, pp. 2478-2493.
WWW Link. 0609
DNA microarrays; Microarray gene clustering; Image context modeling BibRef

Lee, J.G.[Jian-Guo], Zhang, C.S.[Chang-Shui],
Classification of gene-expression data: The manifold-based metric learning way,
PR(39), No. 12, December 2006, pp. 2450-2463.
WWW Link. 0609
Gene expression; Metric learning; Manifold learning; Nearest neighbor BibRef

Wu, X.T.[Xin-Tao], Ye, Y.[Yong],
Exploring gene causal interactions using an enhanced constraint-based method,
PR(39), No. 12, December 2006, pp. 2439-2449.
WWW Link. 0609
Causal modeling; Microarray; Interaction analysis BibRef

Lin, T.C.[Tsun-Chen], Liu, R.S.[Ru-Sheng], Chen, C.Y.[Chien-Yu], Chao, Y.T.[Ya-Ting], Chen, S.Y.[Shu-Yuan],
Pattern classification in DNA microarray data of multiple tumor types,
PR(39), No. 12, December 2006, pp. 2426-2438.
WWW Link. 0609
Gene expression profiling; Cancer classification; Genetic algorithm; Silhouette statistics BibRef

Mamitsuka, H.[Hiroshi],
Selecting features in microarray classification using ROC curves,
PR(39), No. 12, December 2006, pp. 2393-2404.
WWW Link. 0609
Feature subset selection; cDNA microarray; ROC; Non-parametric hypothesis testing; Binary classification BibRef

Rovetta, S.[Stefano], Masulli, F.[Francesco],
Shared farthest neighbor approach to clustering of high dimensionality, low cardinality data,
PR(39), No. 12, December 2006, pp. 2415-2425.
WWW Link. 0609
Data clustering; Similarity-based clustering; High-dimensional data analysis; DNA microarray data analysis BibRef

Zahid, M.A.H., Mittal, A.[Ankush], Joshi, R.C.,
A pattern recognition-based approach for phylogenetic network construction with constrained recombination,
PR(39), No. 12, December 2006, pp. 2312-2322.
WWW Link. 0609
Evolutionary relationship; Phylogenetic network; Recombination; SNP; Gall trees; Pattern recognition BibRef

Ruiz, R.[Roberto], Riquelme, J.C.[José C.], Aguilar-Ruiz, J.S.[Jesús S.],
Incremental wrapper-based gene selection from microarray data for cancer classification,
PR(39), No. 12, December 2006, pp. 2383-2392.
WWW Link. 0609
Microarray; Gene selection; Classification; Feature selection BibRef

Ceccarelli, M.[Michele], Antoniol, G.[Giuliano],
A Deformable Grid-Matching Approach for Microarray Images,
IP(15), No. 10, October 2006, pp. 3178-3188.
IEEE DOI 0609
BibRef

Antoniol, G.[Giuliano], Ceccarelli, M.[Michele],
Microarray image gridding with stochastic search based approaches,
IVC(25), No. 2, February 2007, pp. 155-163.
WWW Link. 0701
Markov random fields; Gridding; Genetic algorithm; Microarray BibRef

Novikov, E.[Eugene], Barillot, E.[Emmanuel],
A noise-resistant algorithm for grid finding in microarray image analysis,
MVA(17), No. 5, October 2006, pp. 337-345.
Springer DOI 0609
BibRef

Pham, T.D.[Tuan D.],
Spectral distortion measures for biological sequence comparisons and database searching,
PR(40), No. 2, February 2007, pp. 516-529.
WWW Link. 0611
Distortion measures; DNA sequences; Protein sequences; Bioinformatics BibRef

Pham, T.D.[Tuan D.],
GeoEntropy: A measure of complexity and similarity,
PR(43), No. 3, March 2010, pp. 887-896.
Elsevier DOI 1001
Complexity; Similarity; Entropy; Geostatistics; Prediction; Classification BibRef

Niijima, S.[Satoshi], Kuhara, S.[Satoru],
Gene subset selection in kernel-induced feature space,
PRL(27), No. 16, December 2006, pp. 1884-1892.
WWW Link. 0611
Keywords: Microarray; Gene selection; Cancer classification; Kernel methods BibRef

Lee, A.J.T.[Anthony J.T.], Lin, C.W.[Chao-Wen], Lo, W.H.[Wen-Hsing], Chen, C.C.[Chieh-Chun], Chen, J.X.[Jia-Xin],
A novel filtration method in biological sequence databases,
PRL(28), No. 4, 1 March 2007, pp. 447-458.
WWW Link. 0701
Bioinformatics; Sequence comparison; Filtration method BibRef

Lukac, R.[Rastislav], Plataniotis, K.N.[Konstantinos N.],
cDNA microarray image segmentation using root signals,
IJIST(16), No. 2, 2006, pp. 51-64.
DOI Link 0703
BibRef
Earlier:
Vector Median Root Signals Determination for cDNA Microarray Image Segmentation,
ICIAR05(879-885).
Springer DOI 0509
BibRef

Lukac, R.[Rastislav], Plataniotis, K.N.[Konstantinos N.], Smolka, B.[Bogdan], Venetsanopoulos, A.N.[Anastasios N.],
An Automated Multichannel Procedure for cDNA Microarray Image Processing,
ICIAR04(II: 1-8).
Springer DOI 0409
BibRef

Liang, F.M.[Fa-Ming], Wang, N.[Naisyin],
Dynamic agglomerative clustering of gene expression profiles,
PRL(28), No. 9, 1 July 2007, pp. 1062-1076.
WWW Link. 0704
Dynamic agglomerative clustering; Gene expression profile; Mini-cluster gene; Scattered gene; Silhouette width; Singleton gene BibRef

Bello, M.[Musodiq], Ju, T.[Tao], Carson, J.[James], Warren, J.[Joe], Chiu, W.[Wah], Kakadiaris, I.A.[Ioannis A.],
Learning-Based Segmentation Framework for Tissue Images Containing Gene Expression Data,
MedImg(26), No. 5, May 2007, pp. 728-744.
IEEE DOI 0705
BibRef

Ray, S.S., Bandyopadhyay, S., Pal, S.K.,
Dynamic Range-Based Distance Measure for Microarray Expressions and a Fast Gene-Ordering Algorithm,
SMC-B(37), No. 3, June 2007, pp. 742-749.
IEEE DOI 0706
BibRef

Kaban, A.[Ata],
On Bayesian classification with Laplace priors,
PRL(28), No. 10, 15 July 2007, pp. 1271-1282.
WWW Link. 0706
Laplace prior; Variational Bayes; Sparsity; Shrinkage effect; Predictive features; Microarray gene expressions BibRef

Cao, K.[Kajia], Zhu, Q.M.[Qiu-Ming], Iqbal, J.[Javeed], Chan, J.W.C.[John W.C.],
A trend pattern assessment approach to microarray gene expression profiling data analysis,
PRL(28), No. 12, 1 September 2007, pp. 1472-1482.
WWW Link. 0707
Gene expression profiling; Microarray data analysis; Boundary points; Dynamical patterns; Trend evaluations; Fisher's discriminate criterion BibRef

Li, J.[Jie], Tang, X.L.[Xiang-Long], Zhao, W.[Wei], Huang, J.H.[Jian-Hua],
A new framework for identifying differentially expressed genes,
PR(40), No. 11, November 2007, pp. 3249-3262.
WWW Link. 0707
Microarray data; t-Test; Wilcoxon rank sum test; KS-test; Differentially expressed genes; "Outlier" gene; Regression model; Window of confidence level BibRef

Zhu, Z.X.[Ze-Xuan], Ong, Y.S.[Yew-Soon], Dash, M.[Manoranjan],
Markov blanket-embedded genetic algorithm for gene selection,
PR(40), No. 11, November 2007, pp. 3236-3248.
WWW Link. 0707
Microarray; Feature selection; Markov blanket; Genetic algorithm (GA); Memetic algorithm (MA) BibRef

Wang, H.Q.A.[Hong-Qi-Ang], Wong, H.S.[Hau-San], Huang, D.S.[De-Shuang], Shu, J.[Jun],
Extracting gene regulation information for cancer classification,
PR(40), No. 12, December 2007, pp. 3379-3392.
WWW Link. 0709
Cancer classification; Gene expression levels; Gene regulation; Microarray; Prediction strength BibRef

Napoletani, D., Struppa, D.C., Sauer, T., Morozov, V., Vsevolodov, N., Bailey, C.,
Functional dissipation microarrays for classification,
PR(40), No. 12, December 2007, pp. 3393-3400.
WWW Link. 0709
Features enhancement; Matching pursuit; Classification; Non-linear iterative maps; Wavelet transforms BibRef

Groot, P.[Perry], Gilissen, C.[Christian], Egmont-Petersen, M.[Michael],
Error probabilities for local extrema in gene expression data,
PRL(28), No. 15, 1 November 2007, pp. 2133-2142.
WWW Link. 0711
Statistics; Scale-space theory; Bivariate Gaussian integration; Gene expression BibRef

Ridgway, G.R., Godsill, S.J.,
Bayesian Image Modeling of cDNA Microarray Spots,
SPLetters(14), No. 10, October 2007, pp. 653-656.
IEEE DOI 0711
BibRef

Hoogeboom, H., Kosters, W., Laros, J.,
Selection of DNA Markers,
SMC-C(38), No. 1, January 2008, pp. 26-32.
IEEE DOI 0712
BibRef

Morris, D.,
Blind Microarray Gridding: A New Framework,
SMC-C(38), No. 1, January 2008, pp. 33-41.
IEEE DOI 0712
BibRef

Son, Y.S.[Young Sook], Baek, J.S.[Jang-Sun],
A modified correlation coefficient based similarity measure for clustering time-course gene expression data,
PRL(29), No. 3, 1 February 2008, pp. 232-242.
WWW Link. 0801
Pearson's correlation coefficient; Spearmann's correlation coefficient; Modified correlation coefficient; Similarity; Clustering; Time-course gene expression data BibRef

Mancuso, K.[Katherine], Hendrickson, A.E.[Anita E.], Connor, Jr., T.B.[Thomas B.], Mauck, M.C.[Matthew C.], Kinsella, J.J.[James J.], Hauswirth, W.W.[William W.], Neitz, J.[Jay], Neitz, M.[Maureen],
Recombinant adeno-associated virus targets passenger gene expression to cones in primate retina,
JOSA-A(24), No. 5, May 2007, pp. 1411-1416.
WWW Link. 0801
BibRef

Li, J., Tang, X., Liu, J., Huang, J., Wang, Y.,
A novel approach to feature extraction from classification models based on information gene pairs,
PR(41), No. 6, June 2008, pp. 1975-1984.
WWW Link. 0802
Feature extraction; Information gene pair; Microarray data; Cancer classification; Genetic algorithm BibRef

Cho, H., Lee, J.K.,
Error-Pooling Empirical Bayes Model for Enhanced Statistical Discovery of Differential Expression in Microarray Data,
SMC-A(38), No. 2, March 2008, pp. 425-436.
IEEE DOI 0803
BibRef

Nilsson, B.[Bjorn],
A compression algorithm for pre-simulated Monte Carlo p-value functions: Application to the ontological analysis of microarray studies,
PRL(29), No. 6, 15 April 2008, pp. 768-772.
WWW Link. 0803
Biomedical pattern recognition; Bioinformatics; Microarrays; Ontological analysis; Data compression BibRef

Liu, E.T.,
Gene Array Technologies in Biological Investigations,
PIEEE(93), No. 4, April 2005, pp. 737-749.
IEEE DOI 0504
BibRef

Calhoun, V.D.[Vince D.],
Does the Brain Rest?: An Independent Component Analysis of Temporally Coherent Brain Networks at Rest and During a Cognitive Task,
Southwest08(201-204).
IEEE DOI 0803
BibRef

Zacharia, E., Maroulis, D.,
An Original Genetic Approach to the Fully Automatic Gridding of Microarray Images,
MedImg(27), No. 6, June 2008, pp. 805-813.
IEEE DOI 0711
BibRef

Ho, J.[Jinn], Hwang, W.L.[Wen-Liang], Lu, H.H.S., Lee, D.T.,
Gridding Spot Centers of Smoothly Distorted Microarray Images,
IP(15), No. 2, February 2006, pp. 342-353.
IEEE DOI 0602
BibRef

Ho, J.[Jinn], Hwang, W.L.[Wen-Liang],
Automatic Microarray Spot Segmentation Using a Snake-Fisher Model,
MedImg(27), No. 6, June 2008, pp. 847-857.
IEEE DOI 0711
BibRef
Earlier:
Segmenting Microarray Image Spots using an Active Contour Approach,
ICIP07(VI: 273-276).
IEEE DOI 0709
BibRef

Meyer, M.G.[Michael G.], Fauver, M.[Mark], Rahn, J.R.[J. Richard], Neumann, T.[Thomas], Patten, F.W.[Florence W.], Seibel, E.J.[Eric J.], Nelson, A.C.[Alan C.],
Automated cell analysis in 2D and 3D: A comparative study,
PR(42), No. 1, January 2009, pp. 141-146.
WWW Link. 0809
Automated classification; 3D; Cancer diagnosis; Tomography BibRef

Hua, J.P.[Jian-Ping], Tembe, W.D.[Waibhav D.], Dougherty, E.R.[Edward R.],
Performance of feature-selection methods in the classification of high-dimension data,
PR(42), No. 3, March 2009, pp. 409-424.
WWW Link. 0811
Classification; Feature selection; Microarray BibRef

Fraser, K.[Karl], Wang, Z.D.[Zi-Dong], Li, Y.M.[Yong-Min], Kellam, P.[Paul], Liu, X.H.[Xiao-Hui],
Can graph-cutting improve microarray gene expression reconstructions?,
PRL(29), No. 16, 1 December 2008, pp. 2129-2136.
WWW Link. 0811
cDNA; Two channel; Microarrays; Background reconstruction; Graph-edge cuts BibRef

Yin, Z.[Zheng], Zhou, X.B.[Xiao-Bo], Sun, Y.X.[You-Xian], Wong, S.T.C.[Stephen T.C.],
Online phenotype discovery based on minimum classification error model,
PR(42), No. 4, April 2009, pp. 509-522.
Elsevier DOI 0812
Online phenotype discovery; Minimum classification error; RNA interference; High content screen; Gap statistics BibRef

Pham, T.D.[Tuan D.], Beck, D.[Dominik], Brandl, M.[Miriam], Zhou, X.B.[Xiao-Bo],
Classification of Proteomic Signals by Block Kriging Error Matching,
ICISP08(281-288).
Springer DOI 0807
BibRef

Liew, A.W.C.[Alan Wee-Chung], Law, N.F.[Ngai-Fong], Cao, X.Q.[Xiao-Qin], Yan, H.[Hong],
Statistical power of Fisher test for the detection of short periodic gene expression profiles,
PR(42), No. 4, April 2009, pp. 549-556.
Elsevier DOI 0812
Gene expression profiles; Periodicity detection; Fisher exact test; g-Statistic; Short signal BibRef

Geng, B.[Bo], Zhou, X.B.[Xiao-Bo], Hung, Y.S.,
Growing enzyme gene networks by integration of gene expression, motif sequence, and metabolic information,
PR(42), No. 4, April 2009, pp. 557-561.
Elsevier DOI 0812
Gene networks; Gene expression; Motif sequence; Metabolic reaction BibRef

Neves, A.J.R.[António J.R.], Pinho, A.J.[Armando J.],
Lossless Compression of Microarray Images Using Image-Dependent Finite-Context Models,
MedImg(28), No. 2, February 2009, pp. 194-201.
IEEE DOI 0902
BibRef
Earlier:
Lossless Compression of Microarray Images,
ICIP06(2505-2508).
IEEE DOI 0610
See also Lossy-to-Lossless Compression of Images Based on Binary Tree Decomposition. BibRef

Pinho, A.J.[Armando J.], Ferreira, P.J.S.G.[Paulo J.S.G.],
Image similarity using the normalized compression distance based on finite context models,
ICIP11(1993-1996).
IEEE DOI 1201
BibRef

Ju, W.[Wen], Shan, J.[Juan], Yan, C.H.[Chang-Hui], Cheng, H.D.,
Discrimination of disease-related non-synonymous single nucleotide polymorphisms using multi-scale RBF kernel fuzzy support vector machine,
PRL(30), No. 4, 1 March 2009, pp. 391-396.
Elsevier DOI 0903
Multi-scale RBF kernel; Membership function; Fuzzy support vector machine (FSVM); Non-synonymous single nucleotide polymorphisms (nsSNPs) BibRef

Namati, E., Thiesse, J., de Ryk, J., McLennan, G.,
In vivo assessment of alveolar morphology using a flexible catheter-based confocal microscope,
IET-CV(2), No. 4, December 2008, pp. 228-235.
DOI Link 0905
BibRef

Hong, J.H.[Jin-Hyuk], Cho, S.B.[Sung-Bae],
Gene boosting for cancer classification based on gene expression profiles,
PR(42), No. 9, September 2009, pp. 1761-1767.
Elsevier DOI 0905
Gene selection; Cancer classification; Wrapper method; Filter method; Boosting BibRef

Kim, H.K.[Hyun-Ki], Chen, S.S.[Su-Shing],
Associative Naive Bayes classifier: Automated linking of gene ontology to medline documents,
PR(42), No. 9, September 2009, pp. 1777-1785.
Elsevier DOI 0905
Data mining; Knowledge discovery; Gene ontology; Document classification BibRef

Zhao, H.Y.[Hong-Ya], Chan, K.L.[Kwok Leung], Cheng, L.M.[Lee-Ming], Yan, H.[Hong],
A probabilistic relaxation labeling framework for reducing the noise effect in geometric biclustering of gene expression data,
PR(42), No. 11, November 2009, pp. 2578-2588.
Elsevier DOI 0907
Gene expression data analysis; Clustering; Biclustering; Hough transform; Probabilistic relaxation labeling BibRef

Mukhopadhyay, A.[Anirban], Maulik, U.[Ujjwal],
Towards improving fuzzy clustering using support vector machine: Application to gene expression data,
PR(42), No. 11, November 2009, pp. 2744-2763.
Elsevier DOI 0907
Microarray gene expression data; Fuzzy clustering; Cluster validity indices; Variable string length genetic algorithm; Support vector machines; Gene ontology BibRef

Karimi, N., Samavi, S., Shirani, S., Behnamfar, P.,
Segmentation of DNA microarray images using an adaptive graph-based method,
IET-IPR(4), No. 1, February 2010, pp. 19-27.
DOI Link 1002
BibRef

Yoon, Y., Bien, S., Park, S.,
Microarray Data Classifier Consisting of k-Top-Scoring Rank-Comparison Decision Rules With a Variable Number of Genes,
SMC-C(40), No. 2, March 2010, pp. 216-226.
IEEE DOI 1003
BibRef

Liu, C.C.[Chao-Chun], Dai, D.Q.[Dao-Qing], Yan, H.[Hong],
The theoretic framework of local weighted approximation for microarray missing value estimation,
PR(43), No. 8, August 2010, pp. 2993-3002.
Elsevier DOI 1006
DNA microarray data analysis; Missing value estimation; Local weighted approximation BibRef

Zifan, A.[Ali], Moradi, M.H.[Mohammad Hassan], Gharibzadeh, S.[Shahriar],
Microarray image enhancement by denoising using decimated and undecimated multiwavelet transforms,
SIViP(4), No. 2, June 2010, pp. xx-yy.
Springer DOI 1006
BibRef

Howlader, T., Chaubey, Y.P.,
Noise Reduction of cDNA Microarray Images Using Complex Wavelets,
IP(19), No. 8, August 2010, pp. 1953-1967.
IEEE DOI 1008
BibRef

Hernandez-Lobato, D.[Daniel], Hernandez-Lobato, J.M.[Jose Miguel], Suarez, A.[Alberto],
Expectation Propagation for microarray data classification,
PRL(31), No. 12, 1 September 2010, pp. 1618-1626.
Elsevier DOI 1008
Microarray data; Bayesian inference; Expectation Propagation BibRef

Hernandez-Lobato, J.M.[Jose Miguel], Hernandez-Lobato, D.[Daniel], Suarez, A.[Alberto],
Network-based sparse Bayesian classification,
PR(44), No. 4, April 2011, pp. 886-900.
Elsevier DOI 1101
Network based classification; Expectation propagation; Spike and slab; Markov random field; Sparsity; Feature selection BibRef

Aygun, E., Oommen, B.J., Cataltepe, Z.,
Peptide classification using optimal and information theoretic syntactic modeling,
PR(43), No. 11, November 2010, pp. 3891-3899.
Elsevier DOI 1008
Biological sequence analysis; Optimal and information theoretic syntactic classification; Peptide classification; Sequence processing; Syntactic pattern recognition BibRef

Macintyre, G.[Geoff], Bailey, J.[James], Gustafsson, D.[Daniel], Haviv, I.[Izhak], Kowalczyk, A.[Adam],
Using Gene Ontology annotations in exploratory microarray clustering to understand cancer etiology,
PRL(31), No. 14, 15 October 2010, pp. 2138-2146.
Elsevier DOI 1003
Microarray; Gene Ontology; Clustering; Cancer BibRef

Bi, C.P.[Cheng-Peng],
Comparison of optimization techniques for sequence pattern discovery by maximum-likelihood,
PRL(31), No. 14, 15 October 2010, pp. 2147-2160.
Elsevier DOI 1003
Maximum-likelihood; Expectation maximization (EM); Markov chain Monte Carlo; Motif discovery; Multiple local alignment; Gene regulation BibRef

Ngom, A.[Alioune], Rueda, L.[Luis], Wang, L.[Lili], Gras, R.[Robin],
Selection based heuristics for the non-unique oligonucleotide probe selection problem in microarray design,
PRL(31), No. 14, 15 October 2010, pp. 2113-2125.
Elsevier DOI 1003
Microarray; Probe; Selection; Separation; Coverage; Heuristic BibRef

Pittelkow, Y.E.[Yvonne E.], Wilson, S.R.[Susan R.],
A novel statistical model for finding patterns in cell-cycle transcription data,
PRL(31), No. 14, 15 October 2010, pp. 2126-2132.
Elsevier DOI 1003
h-Profile plots; Covariance biplots; Time course experiment; Periodic genes; Absolute sine model; Gene expression microarrays BibRef

Twala, B.[Bhekisipho], Phorah, M.[Motee],
Predicting incomplete gene microarray data with the use of supervised learning algorithms,
PRL(31), No. 13, 1 October 2010, pp. 2061-2069.
Elsevier DOI 1003
Supervised learning; Microarray data; Incomplete data; Prediction BibRef

Chaturvedi, I.[Iti], Rajapakse, J.C.[Jagath C.],
Building gene networks with time-delayed regulations,
PRL(31), No. 14, 15 October 2010, pp. 2133-2137.
Elsevier DOI 1003
Dynamic Bayesian networks; Gene regulatory networks; Viterbi algorithm; Skip-chain model; Genetic algorithms BibRef

Maji, P.,
Fuzzy-Rough Supervised Attribute Clustering Algorithm and Classification of Microarray Data,
SMC-B(41), No. 1, February 2011, pp. 222-233.
IEEE DOI 1102
BibRef

Goswami, M.[Mausumi], Sarmah, R.[Rosy], Bhattacharyya, D.K.,
CNNC: a common nearest neighbour clustering approach for gene expression data,
IJCVR(2), No. 2, 2011, pp. 115-126.
DOI Link 1109
BibRef

Zineddin, B., Wang, Z., Liu, X.,
Cellular Neural Networks, the Navier-Stokes Equation, and Microarray Image Reconstruction,
IP(20), No. 11, November 2011, pp. 3296-3301.
IEEE DOI 1110
BibRef

Tapia, E., Bulacio, P., Angelone, L.,
Sparse and stable gene selection with consensus SVM-RFE,
PRL(33), No. 2, 15 January 2012, pp. 164-172.
Elsevier DOI 1112
SVM-RFE; Microarray; Sparse gene selection; Gene selection stability BibRef

Orsenigo, C., Vercellis, C.,
An effective double-bounded tree-connected Isomap algorithm for microarray data classification,
PRL(33), No. 1, 1 January 2012, pp. 9-16.
Elsevier DOI 1112
Nonlinear dimensionality reduction; Isomap; Microarray data; Support vector machines BibRef

Cheng, K.O., Law, N.F., Siu, W.C.,
Iterative bicluster-based least square framework for estimation of missing values in microarray gene expression data,
PR(45), No. 4, April 2012, pp. 1281-1289.
Elsevier DOI 1112
Missing value imputation; Biclustering; Iterative estimation; Gene expression analysis BibRef

Yu, Z.W.[Zhi-Wen], Wong, H.S.[Hau-San], You, J.[Jane], Yu, G.X.[Guo-Xian], Han, G.Q.[Guo-Qiang],
Hybrid cluster ensemble framework based on the random combination of data transformation operators,
PR(45), No. 5, May 2012, pp. 1826-1837.
Elsevier DOI 1201
Cluster ensemble; Data transformation; Data mining; Gene expression profile BibRef

Zhang, W.F.[Wei-Feng], Liu, C.C.[Chao-Chun], Yan, H.[Hong],
Clustering of temporal gene expression data by regularized spline regression and an energy based similarity measure,
PR(43), No. 12, December 2010, pp. 3969-3976.
Elsevier DOI 1003
Spline model; Regularized regression; Energy operator; Temporal gene expression data analysis; Clustering BibRef

Hanczar, B.[Blaise], Nadif, M.[Mohamed],
Ensemble methods for biclustering tasks,
PR(45), No. 11, November 2012, pp. 3938-3949.
Elsevier DOI 1206
Co-clustering; Ensemble methods; Microarray data BibRef

Yan, D.[Dechun], Wang, J.J.[Jia-Jun],
Biclustering of gene expression data based on related genes and conditions extraction,
PR(46), No. 4, April 2013, pp. 1170-1182.
Elsevier DOI 1301
Biclustering; Microarray; Gene expression data; Missing data estimation BibRef

Wang, J.Z.[Jian-Zhong], Wu, L.[Lishan], Kong, J.[Jun], Li, Y.X.[Yu-Xin], Zhang, B.[Baoxue],
Maximum weight and minimum redundancy: A novel framework for feature subset selection,
PR(46), No. 6, June 2013, pp. 1616-1627.
Elsevier DOI 1302
Feature selection; Maximum weight and minimum redundancy; Face recognition; Microarray classification; Text categorization BibRef

Deng, H.[Houtao], Runger, G.[George],
Gene selection with guided regularized random forest,
PR(46), No. 12, 2013, pp. 3483-3489.
Elsevier DOI 1308
Classification BibRef

Roy, S.[Swarup], Bhattacharyya, D.K.[Dhruba K.], Kalita, J.K.[Jugal K.],
CoBi: Pattern Based Co-Regulated Biclustering of Gene Expression Data,
PRL(34), No. 14, 2013, pp. 1669-1678.
Elsevier DOI 1308
Biclustering BibRef

Havukkala, I.[Ilkka], Kuijper, A.[Arjan],
Comparing Bitmapped Microrna Structure Images Using Mutual Symmetry,
IJIG(13), No. 03, 2013, pp. 1350008.
DOI Link 1309
BibRef

Mirauta, B.[Bogdan], Nicolas, P.[Pierre], Richard, H.[Hugues],
Pardiff: Inference of Differential Expression at Base-Pair Level from RNA-Seq Experiments,
PR-PS-BB13(418-427).
Springer DOI 1309
BibRef

You, W.J.[Wen-Jie], Yang, Z.J.[Zi-Jiang], Yuan, M.S.[Ming-Shun], Ji, G.[Guoli],
TotalPLS: Local Dimension Reduction for Multicategory Microarray Data,
HMS(44), No. 1, February 2014, pp. 125-138.
IEEE DOI 1403
biology computing BibRef

Bolón-Canedo, V., Sánchez-Maroño, N., Alonso-Betanzos, A.,
An ensemble of filters and classifiers for microarray data classification,
PR(45), No. 1, 2012, pp. 531-539.
Elsevier DOI 1410
Feature selection BibRef

Maraziotis, I.A.[Ioannis A.],
A semi-supervised fuzzy clustering algorithm applied to gene expression data,
PR(45), No. 1, 2012, pp. 637-648.
Elsevier DOI 1410
Semi-supervised clustering BibRef

Derfoul, R., Le Guyader, C.,
A Relaxed Problem of Registration Based on the Saint Venant-Kirchhoff Material Stored Energy for the Mapping of Mouse Brain Gene Expression Data to a Neuroanatomical Mouse Atlas,
SIIMS(7), No. 4, 2014, pp. 2175-2195.
DOI Link 1412
BibRef

Gaffling, S., Daum, V., Steidl, S., Maier, A., Kostler, H., Hornegger, J.,
A Gauss-Seidel Iteration Scheme for Reference-Free 3-D Histological Image Reconstruction,
MedImg(34), No. 2, February 2015, pp. 514-530.
IEEE DOI 1502
Image reconstruction BibRef

Nguyen, T.[Thanh], Khosravi, A.[Abbas], Creighton, D.[Douglas], Nahavandi, S.[Saeid],
A novel aggregate gene selection method for microarray data classification,
PRL(60-61), No. 1, 2015, pp. 16-23.
Elsevier DOI 1506
Gene selection BibRef

Liu, Z.[Zhe], Song, Y.Q.[Yu-Qing], Xie, C.H.[Cong-Hua], Tang, Z.[Zheng],
A new clustering method of gene expression data based on multivariate Gaussian mixture models,
SIViP(10), No. 1, February 2016, pp. 359-368.
WWW Link. 1601
BibRef

Hernandez-Cabronero, M., Blanes, I., Pinho, A.J., Marcellin, M.W., Serra-Sagrista, J.,
Analysis-Driven Lossy Compression of DNA Microarray Images,
MedImg(35), No. 2, February 2016, pp. 654-664.
IEEE DOI 1602
Customer relationship management BibRef

Hernández-Cabronero, M., Sanchez, V., Aulí-Llinàs, F., Serra-Sagristà, J.,
Fast MCT optimization for the compression of whole-slide images,
ICIP16(2370-2374)
IEEE DOI 1610
Bit rate BibRef

Hernández-Cabronero, M., Blanes, I., Pinho, A.J., Marcellin, M.W., Serra-Sagristà, J.,
Progressive Lossy-to-Lossless Compression of DNA Microarray Images,
SPLetters(23), No. 5, May 2016, pp. 698-702.
IEEE DOI 1604
Context BibRef

Giannakeas, N.[Nikolaos], Kalatzis, F.[Fanis], Tsipouras, M.G.[Markos G.], Fotiadis, D.I.[Dimitrios I.],
A generalized methodology for the gridding of microarray images with rectangular or hexagonal grid,
SIViP(10), No. 4, April 2016, pp. 719-728.
Springer DOI 1604
BibRef

Wen, Z.J.[Zhi-Jie], Li, Z.[Zhuojun], Peng, Y.[Yaxin], Ying, S.[Shihui],
Virus image classification using multi-scale completed local binary pattern features extracted from filtered images by multi-scale principal component analysis,
PRL(79), No. 1, 2016, pp. 25-30.
Elsevier DOI 1608
Virus Image BibRef

Vahadane, A., Peng, T., Sethi, A., Albarqouni, S., Wang, L., Baust, M., Steiger, K., Schlitter, A.M., Esposito, I., Navab, N.,
Structure-Preserving Color Normalization and Sparse Stain Separation for Histological Images,
MedImg(35), No. 8, August 2016, pp. 1962-1971.
IEEE DOI 1608
Biology BibRef

Saberkari, H.[Hamidreza], Farsani, M.S.[Mahsa Saffari], Aminkar, S.[Sahar], Shamsi, M.[Mousa],
An Efficient Algorithm for Small Gene Prediction in DNA Sequences,
IJCVSP(6), No. 1, 2016, pp. 4.
HTML Version. 1609
BibRef

Borovec, J.[Jirí], Kybic, J.[Jan],
Binary Pattern Dictionary Learning for Gene Expression Representation in Drosophila Imaginal Discs,
MCBMIIA16(II: 555-569).
Springer DOI 1704
BibRef


Fatmi, A.E., Chentoufi, A., Bekri, M.A., Benhlima, S., Sabbane, M.,
A heuristic algorithm for RNA secondary structure based on genetic algorithm,
ISCV17(1-7)
IEEE DOI 1710
Genetic algorithms, Minimization, Prediction algorithms, RNA, Sociology, Statistics, Thermodynamics BibRef

Chentoufi, A., Fatmi, A.E., Bekri, A., Benhlima, S., Sabbane, M.,
Genetic algorithms and dynamic weighted sum method for RNA alignment,
ISCV17(1-5)
IEEE DOI 1710
Genetic algorithms, Heuristic algorithms, Linear programming, RNA, Sociology, Statistics, Bioinformatics, Intelligent system, Multiple sequence alignment, Weighted sum method, genetic, algorithm BibRef

García, V., Sánchez, J.S., Cleofas-Sánchez, L., Ochoa-Domínguez, H.J., López-Orozco, F.,
An Insight on the 'Large G, Small n' Problem in Gene-Expression Microarray Classification,
IbPRIA17(483-490).
Springer DOI 1706
BibRef

Pratas, D.[Diogo], Pinho, A.J.[Armando J.],
On the Approximation of the Kolmogorov Complexity for DNA Sequences,
IbPRIA17(259-266).
Springer DOI 1706
BibRef

Bombrun, M.[Maxime], Ranefall, P.[Petter], Lindblad, J.[Joakim], Allalou, A.[Amin], Partel, G.[Gabriele], Solorzano, L.[Leslie], Qian, X.Y.[Xiao-Yan], Nilsson, M.[Mats], Wählby, C.[Carolina],
Decoding Gene Expression in 2D and 3D,
SCIA17(II: 257-268).
Springer DOI 1706
BibRef

Paul, A.K., Shill, P.C.,
Reconstruction of gene network through Backward Elimination based Information-Theoretic Inference with Maximal Information Coefficient,
IVPR17(1-5)
IEEE DOI 1704
Entropy BibRef

Dakhli, A.[Abdesselem], Bellil, W.[Wajdi], Ben Amar, C.[Chokri],
Wavelet Neural Network Initialization Using LTS for DNA Sequence Classification,
ACIVS16(661-673).
Springer DOI 1611
BibRef

Browet, A., De Vleeschouwer, C., Jacques, L., Mathiah, N., Saykali, B., Migeotte, I.,
Cell segmentation with random ferns and graph-cuts,
ICIP16(4145-4149)
IEEE DOI 1610
Embryo BibRef

Jeong, S.G.[Seong-Gyun], Tarabalka, Y.[Yuliya], Zerubia, J.B.[Josiane B.],
Stochastic model for curvilinear structure reconstruction using morphological profiles,
ICIP15(3575-3579)
IEEE DOI 1512
curvilinear structure modeling. E.g. DNA filaments. BibRef

Paul, S.[Sushmita], Vera, J.[Julio],
Supervised Cluster Analysis of miRNA Expression Data Using Rough Hypercuboid Partition Matrix,
PReMI15(482-494).
Springer DOI 1511
BibRef

Wiewiorka, M.S.[Marek S.], Szabelska, A.[Alicja], Okoniewski, M.J.[Michal J.],
Analysis of AmpliSeq RNA-Sequencing Enrichment Panels,
PReMI15(495-500).
Springer DOI 1511
BibRef

Masuda, A.[Atsuki], Raytchev, B.[Bisser], Kurita, T.[Takio], Imamura, T.[Toru], Suzuki, M.[Masashi], Tamaki, T.[Toru], Kaneda, K.[Kazufumi],
Automatic Detection of Good/Bad Colonies of iPS Cells Using Local Features,
MLMI15(153-160).
Springer DOI 1511
BibRef

Bouazza, S.H., Hamdi, N., Zeroual, A., Auhmani, K.,
Gene-expression-based cancer classification through feature selection with KNN and SVM classifiers,
ISCV15(1-6)
IEEE DOI 1506
cancer BibRef

Han, Y.X.[Yue-Xing], Daisuke, I., Kakugo, A., Konagaya, A.,
Tracking single microtubules by using B-spline curves and Hausdorff distance,
IPTA14(1-6)
IEEE DOI 1503
image motion analysis BibRef

Kervrann, C.[Charles], Blestel, S.[Sophie], Chretien, D.[Denis],
Conditional random fields for tubulin-microtubule segmentation in cryo-electron tomography,
ICIP14(2080-2084)
IEEE DOI 1502
Aggregates BibRef

Cuellar, L.K.[Luis Kuhn], Pfeffer, S.[Stefan], Chen, Y.X.[Yu-Xiang], Forster, F.[Friedrich],
Automated detection of polysomes in cryoelectron tomography,
ICIP14(2085-2089)
IEEE DOI 1502
Belief propagation BibRef

Singh, A.[Amarjot], Buonassisi, J.[John], Saeedi, P.[Parvaneh], Havelock, J.[Jon],
Automatic blastomere detection in day 1 to day 2 human embryo images using partitioned graphs and ellipsoids,
ICIP14(917-921)
IEEE DOI 1502
Embryo BibRef

Ishihara, K.[Kenta], Ogawa, T.[Takahiro], Haseyama, M.[Miki],
Helicobacter pylori infection detection from multiple x-ray images based on combination use of support vector machine and multiple kernel learning,
ICIP15(4728-4732)
IEEE DOI 1512
BibRef
Earlier:
Helicobacter pylori infection detection from multiple X-ray images based on decision level fusion,
ICIP14(2769-2773)
IEEE DOI 1502
Helicobacter pylori. Cancer BibRef

Perina, A.[Alessandro], Kesa, M.[Maria], Bicego, M.[Manuele],
Expression Microarray Data Classification Using Counting Grids and Fisher Kernel,
ICPR14(1770-1775)
IEEE DOI 1412
Accuracy BibRef

Garibay, C.[Carlos], Sanchez-Ante, G.[Gildardo], Falcon-Morales, L.E.[Luis E.], Sossa, H.[Humberto],
Modified Binary Inertial Particle Swarm Optimization for Gene Selection in DNA Microarray Data,
MCPR15(271-281).
Springer DOI 1506
BibRef

Ocampo, R.[Ricardo], de Luna, M.A.[Marco A.], Vega, R.[Roberto], Sanchez-Ante, G.[Gildardo], Falcon-Morales, L.E.[Luis E.], Sossa, H.[Humberto],
Pattern Analysis in DNA Microarray Data through PCA-Based Gene Selection,
CIARP14(532-539).
Springer DOI 1411
BibRef

Krishna, M.V.[Mahesh Venkata], Denzler, J.[Joachim],
A Hierarchical Bayesian Approach for Unsupervised Cell Phenotype Clustering,
GCPR14(69-80).
Springer DOI 1411
BibRef

Consylman, M., Mukherjee, S., Mukherjee, D.P., Condron, B., Acton, S.T.,
Social behavior analysis of Drosophila larvae via motion activity recognition,
Southwest14(161-164)
IEEE DOI 1406
Gabor filters BibRef

Shao, G.F.[Gui-Fang], Wang, T.[Tingna], Chen, Z.G.[Zhi-Gang], Huang, Y.S.[Yu-Shu], Wen, Y.H.[Yu-Hua],
An improved automatic gridding method for cDNA microarray images,
ICPR12(1615-1618).
WWW Link. 1302
BibRef

Kazmar, T.[Toma], Kvon, E.Z.[Evgeny Z.], Stark, A.[Alexander], Lampert, C.H.[Christoph H.],
Drosophila Embryo Stage Annotation Using Label Propagation,
ICCV13(1089-1096)
IEEE DOI 1403
BibRef

Bessinger, Z.[Zachary], Xing, G.M.[Guang-Ming], Li, Q.[Qi],
Localization of Drosophila embryos using connected components in scale space,
ICIP12(497-500).
IEEE DOI 1302
BibRef

Abe, T.[Toru], Hamada, C.[Chieko],
An effective method of searching for subregions in chromosome images,
ICIP11(1613-1616).
IEEE DOI 1201
BibRef

Thibault, G.[Guillaume], Angulo, J.[Jesus],
Efficient statistical/morphological cell texture characterization and classification,
ICPR12(2440-2443).
WWW Link. 1302
BibRef

Thibault, G.[Guillaume], Angulo, J.[Jesus], Meyer, F.[Fernand],
Advanced statistical matrices for texture characterization: Application to DNA chromatin and microtubule network classification,
ICIP11(53-56).
IEEE DOI 1201
BibRef

Rueda, L.[Luis], Rezaeian, I.[Iman],
Applications of Multilevel Thresholding Algorithms to Transcriptomics Data,
CIARP11(26-37).
Springer DOI 1111
Microarrays for genetic data. BibRef

Zhang, W.F.[Wei-Feng], Yan, H.[Hong],
Exon prediction using empirical mode decomposition and Fourier transform of structural profiles of DNA sequences,
PR(45), No. 3, March 2012, pp. 947-955.
Elsevier DOI 1111
DNA sequence analysis; Exon prediction; Discrete Fourier transform; Empirical mode decomposition; Structural features of DNA BibRef

Heinrich, J.[Julian], Seifert, R.[Robert], Burch, M.[Michael], Weiskopf, D.[Daniel],
BiCluster Viewer: A Visualization Tool for Analyzing Gene Expression Data,
ISVC11(I: 641-652).
Springer DOI 1109
BibRef

Kurkure, U.[Uday], Le, Y.H.[Yen H.], Paragios, N.[Nikos], Carson, J.P.[James P.], Ju, T.[Tao], Kakadiaris, I.A.[Ioannis A.],
Landmark/image-based deformable registration of gene expression data,
CVPR11(1089-1096).
IEEE DOI 1106
BibRef

Lovato, P.[Pietro], Bicego, M.[Manuele], Cristani, M.[Marco], Jojic, N.[Nebojsa], Perina, A.[Alessandro],
Feature Selection Using Counting Grids: Application to Microarray Data,
SSSPR12(629-637).
Springer DOI 1211
See also Investigating Hidden Markov Models Capabilities in 2D Shape Classification. BibRef

Bicego, M.[Manuele], Lovato, P.[Pietro], Ferrarini, A.[Alberto], Delledonne, M.[Massimo],
Biclustering of Expression Microarray Data with Topic Models,
ICPR10(2728-2731).
IEEE DOI 1008
BibRef

Chiu, T.Y.[Tai-Yu], Hsu, T.C.[Ting-Chieh], Wang, J.S.[Jia-Shung],
AP-Based Consensus Clustering for Gene Expression Time Series,
ICPR10(2512-2515).
IEEE DOI 1008
BibRef

Sun, C.M.[Chang-Ming], Vallotton, P.[Pascal], Fenech, M.[Michael], Thomas, P.[Philip],
Automated Detection of Nucleoplasmic Bridges for DNA Damage Scoring in Binucleated Cells,
ICPR10(2480-2483).
IEEE DOI 1008
BibRef

Das, R.[Ranajit], Mitra, S.[Sushmita], Murthy, C.A., Mukhopadhyay, S.[Subhasis],
A Least Squares Fitting-Based Modeling of Gene Regulatory Sub-networks,
PReMI09(165-170).
Springer DOI 0912
BibRef

Battiato, S.[Sebastiano], Rundo, F.[Francesco],
A bio-inspired CNN with re-indexing engine for lossless DNA microarray compression and segmentation,
ICIP09(1737-1740).
IEEE DOI 0911
BibRef

Wahid, C.M.M.[Choudhury Muhammad Mufassil], Ali, A.B.M.S.[A.B.M. Shawkat], Tickle, K.[Kevin],
Impact of Feature Selection on Support Vector Machine Using Microarray Gene Expression Data,
ICMV09(189-193).
IEEE DOI 0912
BibRef

Mastandrea, F.[Fernando], Pardo, Á.[Álvaro],
Processing of Microarray Images,
CIARP09(962-969).
Springer DOI 0911
BibRef

House, D.[David], Walker, M.L.[Matthew L.], Wu, Z.[Zheng], Wong, J.Y.[Joyce Y.], Betke, M.[Margrit],
Tracking of cell populations to understand their spatio-temporal behavior in response to physical stimuli,
MMBIA09(186-193).
IEEE DOI 0906
BibRef

Martins, D.A.[Daniel A.], Neves, A.J.R.[António J.R.], Pinho, A.J.[Armando J.],
Variable Order Finite-Context Models in DNA Sequence Coding,
IbPRIA09(457-464).
Springer DOI 0906
BibRef

Kylberg, G.[Gustaf], Sintorn, I.M.[Ida-Maria], Borgefors, G.[Gunilla],
Towards Automated TEM for Virus Diagnostics: Segmentation of Grid Squares and Detection of Regions of Interest,
SCIA09(169-178).
Springer DOI 0906
BibRef

Cosatto, E.[Eric], Miller, M.[Matt], Graf, H.P.[Hans Peter], Meyer, J.S.[John S.],
Grading nuclear pleomorphism on histological micrographs,
ICPR08(1-4).
IEEE DOI 0812
BibRef

Gong, Y.C.[Yun-Chao], Chen, C.L.[Chuan-Liang],
Semi-supervised method for gene expression data classification with Gaussian fields and harmonic functions,
ICPR08(1-4).
IEEE DOI 0812
BibRef

Zacharia, E.[Eleni], Maroulis, D.[Dimitirs],
Microarray image analysis based on an evolutionary approach,
ICPR08(1-4).
IEEE DOI 0812
BibRef

Gupta, L.[Lalit], Kumar, S.I.[Sun-Il], Singh, R.[Randeep], Shaik, R.[Rafi], Dimitrova, N.[Nevenka], Gorthi, A.[Aparna], Lakshmi, B., Pai, D.[Deepa], Kamalakaran, S.[Sitharthan], Zhao, X.Y.[Xiao-Yue], Wigler, M.[Michael],
Classification method for microarray probe selection using sequence, thermodynamics and secondary structure parameters,
ICPR08(1-5).
IEEE DOI 0812
BibRef

Essabbah, M., Herisson, J., Otmane, S., Mallem, M.[Malik],
Towards a biophysical 3D model of the DNA,
IPTA08(1-6).
IEEE DOI 0811
BibRef

Akhtar, M.[Mahmood], Ambikairajah, E.[Eliathamby], Epps, J.[Julien],
Digital Signal Processing Techniques for Gene Finding in Eukaryotes,
ICISP08(144-152).
Springer DOI 0807
BibRef

Li, Q.[Qi], Xing, G.M.[Guang-Ming], Shindhelm, A.[Art],
An automatic framework for standardization of drosophila embryonic images,
ICIP08(1824-1827).
IEEE DOI 0810
BibRef

Gelasca, E.D.[Elisa Drelie], Byun, J.[Jiyun], Obara, B.[Boguslaw], Manjunath, B.S.,
Evaluation and benchmark for biological image segmentation,
ICIP08(1816-1819).
IEEE DOI 0810
BibRef

Zacharia, E.[Eleni], Maroulis, D.[Dimitris],
Microarray image gridding via an evolutionary algorithm,
ICIP08(1444-1447).
IEEE DOI 0810
BibRef

Rajagopalan, N.[Narasimhan], Rodriguez, J.J.[Jeffrey J.], Dixon, K.[Kathleen],
An integrated technique for volume estimation of spots in 3-D human cell cultures: Watersnakes,
ICIP08(3004-3007).
IEEE DOI 0810
BibRef

Kachouie, N.N.[Nezamoddin N.], Fieguth, P.W.[Paul W.],
Background estimation for microscopic cellular images,
ICIP08(3040-3043).
IEEE DOI 0810
BibRef

Ersoy, I., Bunyak, F., Mackey, M.A., Palaniappan, K.,
Cell segmentation using Hessian-based detection and contour evolution with directional derivatives,
ICIP08(1804-1807).
IEEE DOI 0810
BibRef

Heffel, A.[Andreas], Stadler, P.F.[Peter F.], Prohaska, S.J.[Sonja J.], Kauer, G.[Gerhard], Kuska, J.P.[Jens-Peer],
Process flow for classification and clustering of fruit fly gene expression patterns,
ICIP08(721-724).
IEEE DOI 0810
BibRef

Souvenir, R.[Richard], Kraftchick, J.P.[Jerrod P.], Lee, S.H.[Sang-Ho], Clemens, M.G.[Mark G.], Shin, M.C.[Min C.],
Cell motion analysis without explicit tracking,
CVPR08(1-7).
IEEE DOI 0806
BibRef

Souvenir, R.[Richard], Kraftchick, J.P.[Jerrod P.], Shin, M.C.[Min C.],
Intuitive Visualization and Querying of Cell Motion,
ISVC08(I: 1061-1070).
Springer DOI 0812
BibRef

Wang, J.[Jun], Chang, S.F.[Shih-Fu], Zhou, X.B.[Xiao-Bo], Wong, S.T.C.[Stephen T.C.],
Active microscopic cellular image annotation by superposable graph transduction with imbalanced labels,
CVPR08(1-8).
IEEE DOI 0806
BibRef

Fuchs, M.[Matthias], Gerber, S.[Samuel],
Variational shape detection in microscope images based on joint shape and image feature statistics,
MMBIA08(1-8).
IEEE DOI 0806
BibRef

Roa, F.[Felida], Bravo, A.[Antonio], Valery, A.[Alexis],
Automated characterization of bacteria in confocal microscope images,
MMBIA08(1-8).
IEEE DOI 0806
BibRef

Kashef, R.[Rasha], Kamel, M.S.[Mohamed S.],
Efficient Bisecting k -Medoids and Its Application in Gene Expression Analysis,
ICIAR08(xx-yy).
Springer DOI 0806
BibRef

Das, M.[Mouli], De, R.K.[Rajat K.], Mukhopadhyay, S.[Subhasis],
Identification of Gene Regulatory Pathways: A Regularization Method,
PReMI07(425-432).
Springer DOI 0712
BibRef

Das, R.[Ranajit], Mitra, S.[Sushmita], Mukhopadhyay, S.[Subhasis],
Cross-Correlation and Evolutionary Biclustering: Extracting Gene Interaction Sub-networks,
PReMI09(199-204).
Springer DOI 0912
BibRef

Das, R.[Ranajit], Mitra, S.[Sushmita], Banka, H.[Haider], Mukhopadhyay, S.[Subhasis],
Evolutionary Biclustering with Correlation for Gene Interaction Networks,
PReMI07(416-424).
Springer DOI 0712
BibRef

Khatri, P.[Purvesh], Draghici, S.[Sorin], Tarca, A.L.[Adi L.], Hassan, S.S.[Sonia S.], Romero, R.[Roberto],
A System Biology Approach for the Steady-State Analysis of Gene Signaling Networks,
CIARP07(32-41).
Springer DOI 0711
BibRef

Capua, R.O.[Renatha Oliva], da Gama Leitão, H.C.[Helena Cristina], Stolfi, J.[Jorge],
Bayesian Detection of Coding Regions in DNA/RNA Sequences Through Event Factoring,
CIARP07(624-634).
Springer DOI 0711
BibRef

Tsaftaris, S.A.[Sotirios A.], Ahuja, R.[Ramandeep], Shiell, D.[Derek], Katsaggelos, A.K.[Aggelos K.],
DNA Microarray Image Intensity Extraction using Eigenspots,
ICIP07(VI: 265-268).
IEEE DOI 0709
BibRef

Neekabadi, A., Samavi, S., Razavi, S.A., Karimi, N., Shirani, S.,
Lossless Microarray Image Compression using Region Based Predictors,
ICIP07(II: 349-352).
IEEE DOI 0709
BibRef

Rueda, L.[Luis], Uyarte, O.[Omar], Valenzuela, S.[Sofia], Rodriguez, J.[Jaime],
Processing Random Amplified Polymorphysm DNA Images Using the Radon Transform and Mathematical Morphology,
ICIAR07(1071-1081).
Springer DOI 0708
BibRef

Rueda, L.[Luis],
Sub-grid Detection in DNA Microarray Images,
PSIVT07(248-259).
Springer DOI 0712
BibRef

Rueda, L.[Luis], Qin, L.[Li],
A New Method for DNA Microarray Image Segmentation,
ICIAR05(886-893).
Springer DOI 0509
BibRef
Earlier:
An Improved Clustering-Based Approach for DNA Microarray Image Segmentation,
ICIAR04(II: 17-24).
Springer DOI 0409
BibRef

Rueda, L.[Luis], Vidyadharan, V.[Vidya],
A New Approach to Automatically Detecting Grids in DNA Microarray Images,
ICIAR05(982-989).
Springer DOI 0509
BibRef

Moghadam, P.J.[Pooria Jafari], Moradi, M.H.[Mohamad H.],
Image Sifting for Micro Array Image Enhancement,
CAIP07(871-877).
Springer DOI 0708
BibRef

Athanasiadis, E.[Emmanouil], Cavouras, D.[Dionisis], Spyridonos, P.[Panagiota], Kalatzis, I.[Ioannis], Nikiforidis, G.[George],
An Automatic Microarray Image Gridding Technique Based on Continuous Wavelet Transform,
CAIP07(864-870).
Springer DOI 0708
BibRef

Okun, O.[Oleg], Priisalu, H.[Helen],
Random Forest for Gene Expression Based Cancer Classification: Overlooked Issues,
IbPRIA07(II: 483-490).
Springer DOI 0706
BibRef

Allalou, A.[Amin], van de Rijke, F.M.[Frans M.], Tafrechi, R.J.[Roos Jahangir], Raap, A.K.[Anton K.], Wählby, C.[Carolina],
Image Based Measurements of Single Cell mtDNA Mutation Load,
SCIA07(631-640).
Springer DOI 0706
BibRef

Fuentes, A.R.[Aníbal Rodríguez], Ginori, J.V.L.[Juan V. Lorenzo], Ábalo, R.G.[Ricardo Grau],
Detection of Coding Regions in Large DNA Sequences Using the Short Time Fourier Transform with Reduced Computational Load,
CIARP06(902-909).
Springer DOI 0611
BibRef

Vanteru, B., Shaik, J., Yeasin, M.,
Web-Based Interface for the Visualization of Microarray Data,
ISVC06(I: 813-821).
Springer DOI 0611
BibRef

Saffarian, N.[Nader], Zou, J.J.[Ju Jia],
DNA Microarray Image Enhancement Using Conditional Sub-Block Bi-Histogram Equalization,
AVSBS06(86-86).
IEEE DOI 0611
BibRef

Peter, H.[Hansruedi], Fischer, B.[Bernd], Buhmann, J.M.[Joachim M.],
Probabilistic De Novo Peptide Sequencing with Doubly Charged Ions,
DAGM06(424-433).
Springer DOI 0610
BibRef

Marçal, A.R.S.[André R. S.],
Alternative Methods for Counting Overlapping Grains in Digital Images,
ICIAR08(xx-yy).
Springer DOI 0806
BibRef

Marçal, A.R.S.[André R. S.], Caridade, C.M.R.[Cristina M. R.],
A System for Automatic Counting the Number of Collembola Individuals on Petri Disk Images,
ICIAR06(II: 814-822).
Springer DOI 0610
BibRef

Jain, M.[Monica], Holz, H.[Hilary], Shrager, J.[Jeff], Vallon, O.[Olivier], Hauser, C.[Charles], Grossman, A.[Arthur],
A Hybrid, Recursive Algorithm for Clustering Expressed Sequence Tags in Chlamydomonas reinhardtii,
ICPR06(III: 404-407).
IEEE DOI 0609
BibRef

Mitra, S.[Sushmita], Banka, H.[Haider], Pal, S.K.[Sankar K.],
A MOE framework for Biclustering of Microarray Data,
ICPR06(I: 1154-1157).
IEEE DOI 0609
Gene expression data. BibRef

An, J.Y.[Ji-Yuan], Chen, Y.P.P.[Yi-Ping Phoebe],
Finding Rule Groups to Classify High Dimensional Gene Expression Datasets,
ICPR06(I: 1196-1199).
IEEE DOI 0609
BibRef

Ripon, K.S.N.[Kazi Shah Nawaz], Tsang, C.H.[Chi-Ho], Kwong, S.[Sam], Ip, M.K.[Man-Ki],
Multi-Objective Evolutionary Clustering using Variable-Length Real Jumping Genes Genetic Algorithm,
ICPR06(I: 1200-1203).
IEEE DOI 0609
BibRef

Gan, X.C.[Xiang-Chao], Liew, A.W.C.[Alan Wee-Chung], Yan, H.[Hong],
Detecting Periodically Expressed Genes based on Time-frequency Analysis and L-curve Method,
ICPR06(II: 654-657).
IEEE DOI 0609
BibRef

Harpaz, R.[Rave], Haralick, R.M.[Robert M.],
Exploiting the Geometry of Gene Expression Patterns for Unsupervised Learning,
ICPR06(II: 670-674).
IEEE DOI 0609
BibRef

Lerner, B.[Boaz], Vigdor, B.[Boaz],
Image Classification for Genetic Diagnosis using Fuzzy ARTMAP,
ICPR06(III: 362-365).
IEEE DOI 0609
BibRef

Han, B.H.[Bo-Hyung], Davis, L.S.[Larry S.],
Semi-Parametric Model-Based Clustering for DNA Microarray Data,
ICPR06(III: 324-327).
IEEE DOI 0609
BibRef

Svensson, S.[Stina], Gedda, M.[Magnus], Fanelli, D.[Duccio], Skoglund, U.[Ulf], Ofverstedt, L.G.[Lars-Goran], Sandin, S.[Sara],
Using a fuzzy framework for delineation and decomposition of Immunoglobulin G in cryo electron tomographic images,
ICPR06(IV: 687-690).
IEEE DOI 0609
BibRef

Smolka, B.[Bogdan], Plataniotis, K.N.[Konstantinos N.],
Ultrafast Technique of Impulsive Noise Removal with Application to Microarray Image Denoising,
ICIAR05(990-997).
Springer DOI 0509
BibRef

Jin, H.J.[Hee-Jeong], Chun, B.K.[Bong-Kyung], Cho, H.G.[Hwan-Gue],
Extended-Regular Sequence for Automated Analysis of Microarray Images,
BioInfo05(III: 137-137).
IEEE DOI 0507
BibRef

Bajcsy, P.,
An Overview of DNA Microarray Image Requirements for Automated Processing,
BioInfo05(III: 147-147).
IEEE DOI 0507
BibRef

Churkin, A., Barash, D.,
Pattern Recognition Method to Detect Vulnerable Spots in an RNA Sequence for Bacterial Resistance to the Antibiotic Spectinomycin,
BioInfo05(III: 139-139).
IEEE DOI 0507
BibRef

Muzinich, N.,
Discovery of Prokaryotic Relationships through Latent Structure of Correlated Nucleotide Sequences,
BioInfo05(III: 143-143).
IEEE DOI 0507
BibRef

Hua, D.[Dong], Chen, D.C.[De-Chang], Youssef, A.,
Identifying Genes with The Concept of Customization,
BioInfo05(III: 144-144).
IEEE DOI 0507
BibRef

Song, J.Z., Duan, K.M., Surette, M.,
The Wavelet Transformation for Temporal Gene Expression Analysis,
BioInfo05(III: 148-148).
IEEE DOI 0507
BibRef

Yahiaoui, I., Boujemaa, N.,
Content-based image retrieval in botanical collections for gene expression studies,
ICIP05(III: 1240-1243).
IEEE DOI 0512
BibRef

Saucan, E.[Emil], Appleboim, E.[Eli],
Curvature Based Clustering for DNA Microarray Data Analysis,
IbPRIA05(II:405).
Springer DOI 0509
BibRef

Ahammad, P.[Parvez], Harmon, C.L.[Cyrus L.], Hammonds, A.[Ann], Sastry, S.S.[S. Shankar], Rubin, G.M.[Gerald M.],
Joint Nonparametric Alignment for Analyzing Spatial Gene Expression Patterns in Drosophila Imaginal Discs,
CVPR05(II: 755-760).
IEEE DOI 0507
BibRef

Muresan, L., Heise, B., Klement, E.P., Kybic, J.,
Quantitative Analysis of Microarray Images,
ICIP05(II: 1274-1277).
IEEE DOI 0512
BibRef

Fraser, K., O'Neill, P., Wang, Z.D.[Zi-Dong], Liu, X.H.[Xiao-Hui],
'Copasetic analysis': automated analysis of biological gene expression images,
ICARCV04(II: 1061-1066).
IEEE DOI 0412
BibRef

Lu, X.S.[Xue-Song], Li, Y.D.[Yan-Da], Zhang, X.G.[Xue-Gong],
A simple strategy for detecting outlier samples in microarray data,
ICARCV04(II: 1331-1335).
IEEE DOI 0412
BibRef

Syeda-Mahmood, T.F.,
Order-preserving clustering and its application to gene expression data,
ICPR04(IV: 637-640).
IEEE DOI 0409
BibRef

Mitra, P., Majumder, D.D.,
Feature selection and gene clustering from gene expression data,
ICPR04(II: 343-346).
IEEE DOI 0409
BibRef

Xuan, J.H.[Jian-Hua], Dong, Y.B.[Yi-Bin], Khan, J., Hoffman, E., Clarke, R., Wang, Y.[Yue],
Robust Feature Selection by Weighted Fisher Criterion for Multiclass Prediction in Gene Expression Profiling,
ICPR04(II: 291-294).
IEEE DOI 0409
BibRef

Wei, W.[Wu], Xin, L.[Liu], Min, X.[Xu], Jinrong, P.[Peng], Setiono, R.,
A hybrid SOM-SVM method for analyzing zebra fish gene expression,
ICPR04(II: 323-326).
IEEE DOI 0409
BibRef

Liew, A.W.C.[Alan Wee-Chung], Wu, Y.H.[Yong-Hui], Yan, H.[Hong],
Selection of statistical features based on mutual information for classification of human coding and non-coding DNA sequences,
ICPR04(III: 766-769).
IEEE DOI 0409
BibRef

Blekas, K., Galatsanos, N.P., Georgiou, I.,
An unsupervised artifact correction approach for the analysis of DNA microarray images,
ICIP03(II: 165-168).
IEEE DOI 0312
BibRef

Nakamura, E., Ooura, T., Okuizumi, H., Sawada, K.,
DNA spot extraction via grayscale range quantization and morphological measurement,
ICIP03(I: 569-572).
IEEE DOI 0312
BibRef

Uehara, C., Kakadiaris, I.A.,
Towards automatic analysis of DNA microarrays,
WACV02(57-62).
WWW Link. 0303
BibRef

Yang, Q.[Qing], Parvin, B.,
Harmonic cut and regularized centroid transform for localization of subcellular structures,
ICPR02(I: 788-791).
IEEE DOI 0211
BibRef

Chen, Y.S.[Yong-Sheng], Hung, Y.P.[Yi-Ping], Fuh, C.S.[Chiou-Shann],
Fast semi-local alignment for DNA sequence database search,
ICPR02(III: 1019-1022).
IEEE DOI 0211
BibRef

Jornsten, R., Yu, B.[Bin], Wang, W.[Wei], Ramchandran, K.,
Compression of cDNA and inkjet microarray images,
ICIP02(III: 961-964).
IEEE DOI 0210
BibRef

Kaifel, T., Schiekel, C., Kämpke, T.,
Spotting Approaches for Biochip Arrays,
ICPR00(Vol IV: 356-359).
IEEE DOI 0009
BibRef

Chen, H.Y., Braendle, N.,
Robust Spot Fitting for Genetic Spot Array Images,
ICIP00(Vol III: 412-415).
IEEE DOI 0008
BibRef

Spisz, T., d'Casta, N., Seymour, C.K., Reeves, R., Hoh, J., and Bankman, I.,
Length Determination of DNA Fragments in Atomic Force Microscope Images,
ICIP97(III: 154-157).
IEEE DOI BibRef 9700

Vila, J.L., Bolon, P.,
Directional adaptive image filtering: application to DNA sequence analysis,
ICIP94(I: 382-386).
IEEE DOI 9411
BibRef

Chapter on Medical Applications, CAT, MRI, Ultrasound, Heart Models, Brain Models continues in
Chromosome Analysis and Extraction, Genome .


Last update:Nov 11, 2017 at 13:31:57