20.9.1.2 Brain, Cortex, Registration, MRI, Other

Zuk, T.D., Atkins, M.S.,
A comparison of manual and automatic methods for registering scans of the head,
MedImg(15), No. 5, October 1996, pp. 732-744.
IEEE Top Reference. 0203 Evaluation, Registration. BibRef

Verard, L., Allain, P., Travere, J.M., Baron, J.C., Bloyet, D.,
Fully automatic identification of AC and PC landmarks on brain MRI using scene analysis,
MedImg(16), No. 5, October 1997, pp. 610-616.
IEEE Top Reference. 0205 BibRef

Davatzikos, C.,
Spatial Transformation and Registration of Brain Images Using Elastically Deformable Models,
CVIU(66), No. 2, May 1997, pp. 207-222. 9705
WWW Version. BibRef
Earlier:
Non-Linear Registration of Brain Images Using Deformable Models,
MMBIA96(REGISTRATION II) BibRef

Kyriacou, S.K., Davatzikos, C., Zinreich, S.J., Bryan, R.N.,
Nonlinear elastic registration of brain images with tumor pathology using a biomechanical model [MRI],
MedImg(18), No. 7, July 1999, pp. 580-592.
IEEE Top Reference. 0110 BibRef

Freeborough, P.A., Fox, N.C.,
The boundary shift integral: an accurate and robust measure of cerebral volume changes from registered repeat MRI,
MedImg(16), No. 5, October 1997, pp. 623-629.
IEEE Top Reference. 0205 BibRef

Holden, M., Hill, D.L.G., Denton, E.R.E., Jarosz, J.M., Cox, T.C.S., Rohlfing, T., Goodey, J., Hawkes, D.J.,
Voxel similarity measures for 3-D serial MR brain image registration,
MedImg(19), No. 2, February 2000, pp. 94-102.
IEEE Top Reference. 0110 BibRef

Rohlfing, T.[Torsten], Maurer, Jr., C.R.[Calvin R.],
Shape-Based Averaging,
IP(16), No. 1, January 2007, pp. 153-161.
IEEE DOI may work or IEEE-CS DOI may work. 0701Derived from See also Shape-based interpolation of multidimensional objects. Produce regular structures for MRI data. BibRef

Holden, M., Schnabel, J.A., Hill, D.L.G.,
Quantification of small cerebral ventricular volume changes in treated growth hormone patients using nonrigid registration,
MedImg(21), No. 10, October 2002, pp. 1292-1301.
IEEE Top Reference. 0301 BibRef

Rueckert, D., Frangi, A.F., Schnabel, J.A.,
Automatic construction of 3-D statistical deformation models of the brain using nonrigid registration,
MedImg(22), No. 8, August 2003, pp. 1014-1025.
IEEE Abstract. IEEE Top Reference. 0308 See also Automatic construction of multiple-object three-dimensional statistical shape models: application to cardiac modeling. BibRef

Chen, H.M.[Hua-Mei], Varshney, P.K.,
Mutual Information-Based CT-MR Brain Image Registration Using Generalized Partial Volume Joint Histogram Estimation,
MedImg(22), No. 9, September 2003, pp. 1111-1119.
IEEE Abstract. IEEE Top Reference. 0309 BibRef

Nikou, C., Bueno, G., Heitz, F., Armspach, J.P.,
A Joint Physics-Based Statistical Deformable Model for Multimodal Brain Image Analysis,
MedImg(20), No. 10, October 2001, pp. 1026-1037.
IEEE Top Reference. 0111 See also Statistical Deformable Model-Based Segmentation of Image Motion. BibRef

Musse, O.[Olivier], Heitz, F.[Fabrice], Armspach, J.P.[Jean-Paul],
Topology Preserving Deformable Image Matching Using Constrained Hierarchical Parametric Models,
IP(10), No. 7, July 2001, pp. 1081-1093.
IEEE DOI may work or IEEE-CS DOI may work. 0108 BibRef
Earlier: ICIP00(Vol I: 505-508).
IEEE Abstract. IEEE Top Reference. 0008 BibRef

Musse, O.[Olivier], Heitz, F.[Fabrice], Armspach, J.P.[Jean-Paul],
Fast deformable matching of 3D images over multiscale nested subspaces. Application to atlas-based MRI segmentation,
PR(36), No. 8, August 2003, pp. 1881-1899.
WWW Version. 0304 BibRef

Noblet, V.[Vincent], Heinrich, C.[Christian], Heitz, F.[Fabrice], Armspach, J.P.[Jean-Paul],
3-D Deformable Image Registration: A Topology Preservation Scheme Based on Hierarchical Deformation Models and Interval Analysis Optimization,
IP(14), No. 5, May 2005, pp. 553-566.
IEEE DOI may work or IEEE-CS DOI may work. 0505 BibRef
Earlier:
A Topology Preserving Non-rigid Registration Method Using a Symmetric Similarity Function-Application to 3-D Brain Images,
ECCV04(Vol III: 546-557).
WWW Version. 0405 See also Accurate Inversion of 3-D Transformation Fields. BibRef

Heitz, F., Nikou, C., Armspach, J.P.,
A Physically-Based Statistical Deformable Model for Brain Image Analysis,
ECCV00(II: 528-542).
WWW Version. 0003 BibRef

Bosc, M., Heitz, F., Armspach, J.P.,
Statistical atlas-based sub-voxel segmentation of 3d brain MRI,
ICIP03(II: 1077-1080).
IEEE Abstract. IEEE Top Reference. 0312 BibRef

Miga, M.I., Sinha, T.K., Cash, D.M., Galloway, R.L., Weil, R.J.,
Cortical surface registration for image-guided neurosurgery using laser-range scanning,
MedImg(22), No. 8, August 2003, pp. 973-985.
IEEE Abstract. IEEE Top Reference. 0308 BibRef

Miga, M.I., Paulsen, K.D., Lemery, J.M., Eisner, S.D., Hartov, A., Kennedy, F.E., Roberts, D.W.,
Model-updated image guidance: initial clinical experiences with gravity-induced brain deformation,
MedImg(18), No. 10, October 1999, pp. 866-874.
IEEE Top Reference. 0110 BibRef

Lunn, K.E.[Karen E.], Paulsen, K.D.[Keith D.], Roberts, D.W.[David W.], Kennedy, F.E.[Francis E.], Hartov, A.[Alex], Platenik, L.A.[Leah A.],
Nonrigid brain registration: synthesizing full volume deformation fields from model basis solutions constrained by partial volume intraoperative data,
CVIU(89), No. 2-3, February-March 2003, pp. 299-317.
WWW Version. 0304 BibRef

Hellier, P., Barillot, C., Corouge, I., Gibaud, B., Le Goualher, G., Collins, D.L., Evans, A., Malandain, G., Ayache, N., Christensen, G.E., Johnson, H.J.,
Retrospective evaluation of intersubject brain registration,
MedImg(22), No. 9, September 2003, pp. 1120-1130.
IEEE Abstract. IEEE Top Reference. 0309 BibRef

Hipwell, J.H., Penney, G.P., McLaughlin, R.A., Rhode, K., Summers, P., Cox, T.C., Byrne, J.V., Noble, J.A., Hawkes, D.J.,
Intensity-based 2-D-3-D registration of cerebral angiograms,
MedImg(22), No. 11, November 2003, pp. 1417-1426.
IEEE Abstract. IEEE Top Reference. 0311 See also New Validation Method for X-ray Mammogram Registration Algorithms Using a Projection Model of Breast X-ray Compression, A. See also Comparison of a Similarity-Based and a Feature-Based 2-D to 3-D Registration Method for Neurointerventional Use, A. BibRef

Gefen, S., Tretiak, O.J., Nissanov, J.,
Elastic 3-D alignment of rat brain histological images,
MedImg(22), No. 11, November 2003, pp. 1480-1489.
IEEE Abstract. IEEE Top Reference. 0311 BibRef

Tuzikov, A.V.[Alexander V.], Colliot, O.[Olivier], Bloch, I.[Isabelle],
Evaluation of the symmetry plane in 3D MR brain images,
PRL(24), No. 14, October 2003, pp. 2219-2233.
WWW Version. 0307 BibRef
Earlier:
Brain symmetry plane computation in MR images using inertia axes and optimization,
ICPR02(I: 516-519).
IEEE DOI may work or IEEE-CS DOI may work. 0211 BibRef

Bloch, I.[Isabelle], Colliot, O.[Olivier], Camara, O.[Oscar], Géraud, T.[Thierry],
Fusion of spatial relationships for guiding recognition, example of brain structure recognition in 3D MRI,
PRL(26), No. 4, March 2005, pp. 449-457.
WWW Version. 0501 BibRef

Cointepas, Y., Bloch, I., Garnero, L.,
Cellular complexes: A tool for 3d homotopic segmentation in brain images,
ICIP98(III: 832-836).
IEEE DOI may work or IEEE-CS DOI may work. 9810 BibRef

Xue, Z.[Zhong], Shen, D.G.[Ding-Gang], Davatzikos, C.[Christos],
Determining Correspondence in 3-D MR Brain Images Using Attribute Vectors as Morphological Signatures of Voxels,
MedImg(23), No. 10, October 2004, pp. 1276-1291.
IEEE Abstract. IEEE Top Reference. 0410 See also HAMMER: Hierarchical Attribute Matching Mechanism for Elastic Registration. BibRef

Xue, Z.[Zhong], Shen, D.G.[Ding-Gang], Davatzikos, C.[Christos],
Statistically-Constrained High-Dimensional Warping Using Wavelet-Based Priors,
MMBIA06(71).
IEEE DOI may work or IEEE-CS DOI may work. 0609 BibRef

Makrogiannis, S.[Sokratis], Verma, R.[Ragini], Davatzikos, C.[Christos],
Anatomical Equivalence Class: A Morphological Analysis Framework Using a Lossless Shape Descriptor,
MedImg(26), No. 4, April 2007, pp. 619-631.
IEEE DOI may work or IEEE-CS DOI may work. 0704 BibRef

Makrogiannis, S.[Sokratis], Verma, R.[Ragini], Karacali, B.[Bilge], Davatzikos, C.[Christos],
A Joint Transformation and Residual Image Descriptor for Morphometric Image Analysis using an Equivalence Class Formulation,
MMBIA06(74).
IEEE DOI may work or IEEE-CS DOI may work. 0609 BibRef

Bach Cuadra, M., Pollo, C., Bardera, A., Cuisenaire, O., Villemure, J.G., Thiran, J.P.,
Atlas-Based Segmentation of Pathological MR Brain Images Using a Model of Lesion Growth,
MedImg(23), No. 10, October 2004, pp. 1301-1314.
IEEE Abstract. IEEE Top Reference. 0410 BibRef
Earlier:
Atlas-based segmentation of pathological brain MR images,
ICIP03(I: 573-576).
IEEE Abstract. IEEE Top Reference. 0312 BibRef

Bresson, X., Thiran, J.P.,
Image Segmentation Model using Active Contour and Image Decomposition,
ICIP06(1657-1660). 0610
IEEE DOI may work or IEEE-CS DOI may work. BibRef

Clatz, O., Sermesant, M., Bondiau, P.Y., Delingette, H., Warfield, S.K., Malandain, G., Ayache, N.,
Realistic Simulation of the 3-D Growth of Brain Tumors in MR Images Coupling Diffusion With Biomechanical Deformation,
MedImg(24), No. 10, October 2005, pp. 1334-1346.
IEEE DOI may work or IEEE-CS DOI may work. 0510 BibRef

Clatz, O., Delingette, H., Talos, I.F., Golby, A.J., Kikinis, R., Jolesz, F.A., Ayache, N., Warfield, S.K.,
Robust nonrigid registration to capture brain shift from intraoperative MRI,
MedImg(24), No. 11, November 2005, pp. 1417-1427.
IEEE DOI may work or IEEE-CS DOI may work. 0512 BibRef

de Craene, M., du Bois d'Aische, A., Macq, B., Warfield, S.K.,
Multi-Subject Variational Registration for Probabilistic Unbiased Atlas Generation,
ICIP05(III: 601-604).
IEEE DOI may work or IEEE-CS DOI may work. 0512 BibRef

Wu, G.R.[Guo-Rong], Qi, F.[Feihu], Shen, D.G.[Ding-Gang],
Learning-based deformable registration of MR brain images,
MedImg(25), No. 9, September 2006, pp. 1145-1157.
IEEE DOI may work or IEEE-CS DOI may work. 0609 BibRef

Luan, H.X.[Hong-Xia], Qi, F.[Feihu], Xue, Z.[Zhong], Chen, L.[Liya], Shen, D.G.[Ding-Gang],
Multimodality image registration by maximization of quantitative-qualitative measure of mutual information,
PR(41), No. 1, January 2008, pp. 285-298.
WWW Version. 0710Multimodality image registration; Mutual information; Quantitative-qualitative measure of mutual information; Salient measure; Utilities of events BibRef

Luan, H.X.[Hong-Xia], Qi, F.[Feihu], Shen, D.G.[Ding-Gang],
Multi-modal Image Registration by Quantitative-Qualitative Measure of Mutual Information (Q-MI),
CVBIA05(378-387).
WWW Version. 0601 BibRef

Wang, J.Z.[Jian-Zhe], Jiang, T.Z.[Tian-Zi],
Nonrigid registration of brain MRI using NURBS,
PRL(28), No. 2, 15 January 2007, pp. 214-223.
WWW Version. 0611Nonrigid registration; Free-Form Deformations; NURBS BibRef

Schwarz, D.[Daniel], Kasparek, T.[Tomas], Provaznik, I.[Ivo], Jarkovsky, J.[Jiri],
A Deformable Registration Method for Automated Morphometry of MRI Brain Images in Neuropsychiatric Research,
MedImg(26), No. 4, April 2007, pp. 452-461.
IEEE DOI may work or IEEE-CS DOI may work. 0704 BibRef

Schwarz, D.[Daniel], Kasparek, T.[Tomas],
Brain Tissue Classification with Automated Generation of Training Data Improved by Deformable Registration,
CAIP07(301-308).
WWW Version. 0708 BibRef

Wang, L.[Lei], Beg, F.[Faisal], Ratnanather, T.[Tilak], Ceritoglu, C.[Can], Younes, L.[Laurent], Morris, J.C.[John C.], Csernansky, J.G.[John G.], Miller, M.I.[Michael I.],
Large Deformation Diffeomorphism and Momentum Based Hippocampal Shape Discrimination in Dementia of the Alzheimer type,
MedImg(26), No. 4, April 2007, pp. 462-470.
IEEE DOI may work or IEEE-CS DOI may work. 0704 BibRef

Van Hecke, W., Leemans, A., d'Agostino, E., De Backer, S., Vandervliet, E., Parizel, P.M., Sijbers, J.,
Nonrigid Coregistration of Diffusion Tensor Images Using a Viscous Fluid Model and Mutual Information,
MedImg(26), No. 11, November 2007, pp. 1598-1612.
IEEE DOI may work or IEEE-CS DOI may work. 0709 BibRef

Joshi, A.A., Shattuck, D.W., Thompson, P.M., Leahy, R.M.,
Surface-Constrained Volumetric Brain Registration Using Harmonic Mappings,
MedImg(26), No. 12, December 2007, pp. 1657-1669.
IEEE DOI may work or IEEE-CS DOI may work. 0712 BibRef

Li, Y.[Yong], Xu, N.[Ning], Fitzpatrick, J.M., Morgan, V.L., Pickens, D.R., Dawant, B.M.,
Accounting for Signal Loss Due to Dephasing in the Correction of Distortions in Gradient-Echo EPI Via Nonrigid Registration,
MedImg(26), No. 12, December 2007, pp. 1698-1707.
IEEE DOI may work or IEEE-CS DOI may work. 0712 BibRef

Chung, M.K., Dalton, K.M., Davidson, R.J.,
Tensor-Based Cortical Surface Morphometry via Weighted Spherical Harmonic Representation,
MedImg(27), No. 8, August 2008, pp. 1143-1151.
IEEE DOI may work or IEEE-CS DOI may work. 0808 BibRef

Liu, J., Gao, W., Huang, S., Nowinski, W.L.,
A Model-Based, Semi-Global Segmentation Approach for Automatic 3-D Point Landmark Localization in Neuroimages,
MedImg(27), No. 8, August 2008, pp. 1034-1044.
IEEE DOI may work or IEEE-CS DOI may work. 0808 BibRef

Shams, R.[Ramtin], Kennedy, R.A.[Rodney A.], Sadeghi, P.[Parastoo], Hartley, R.I.[Richard I.],
Gradient Intensity-Based Registration of Multi-Modal Images of the Brain,
ICCV07(1-8).
IEEE DOI may work or IEEE-CS DOI may work. 0710 BibRef

El Munim, H.E.A.[Hossam E Abd], Farag, A.A.[Aly A.],
Elastic Registration of the Corpus Callosum,
ICIP07(V: 377-380).
IEEE DOI may work or IEEE-CS DOI may work. 0709 BibRef

Lee, J.D.[Jiann-Der], Huang, C.H.[Chung-Hsien], Chen, C.W.[Cheng-Wei], Weng, Y.H.[Yi-Hsin], Lin, K.J.[Kun-Ju], Chen, C.T.[Chin-Tu],
A Brain MRI/SPECT Registration System Using an Adaptive Similarity Metric: Application on the Evaluation of Parkinson's Disease,
MIRAGE07(235-246).
WWW Version. 0703 BibRef

Arganda-Carreras, I.[Ignacio], Sorzano, C.O.S.[Carlos O. S.], Marabini, R.[Roberto], Carazo, J.M.[José María], Ortiz-de-Solorzano, C.[Carlos], Kybic, J.[Jan],
Consistent and Elastic Registration of Histological Sections Using Vector-Spline Regularization,
CVAMIA06(85-95).
WWW Version. 0605 BibRef

Zou, G.Y.[Guang-Yu], Hua, J.[Jing], Gu, X.F.[Xian-Feng], Muzik, O.,
An Approach for Intersubject Analysis of 3D Brain Images Based on Conformal Geometry,
ICIP06(1193-1196). 0610
IEEE DOI may work or IEEE-CS DOI may work. BibRef

Gholipour, A.[Ali], Kehtarnavaz, N.[Nasser], Briggs, R.W.[Richard W.], Gopinath, K.S.[Kaundinya S.],
Kullback-Leibler Distance Optimization for Non-rigid Registration of Echo-Planar to Structural Magnetic Resonance Brain Images,
ICIP07(VI: 221-224).
IEEE DOI may work or IEEE-CS DOI may work. 0709 BibRef

Gholipour, A., Kehtarnavaz, N., Gopinath, K.S., Briggs, R.W., Devous, M., Haley, R.,
Distortion Correction via Non-rigid Registration of Functional to Anatomical Magnetic Resonance Brain Images,
ICIP06(1181-1184). 0610
IEEE DOI may work or IEEE-CS DOI may work. BibRef

Villéger, A.[Alice], Ouchchane, L.[Lemlih], Lemaire, J.J.[Jean-Jacques], Boire, J.Y.[Jean-Yves],
Data Fusion and Fuzzy Spatial Relationships for Locating Deep Brain Stimulation Targets in Magnetic Resonance Images,
ACIVS06(909-919).
WWW Version. 0609 BibRef

Zhang, H.H.[Hai-Hong], Guan, C.T.[Cun-Tai],
A Kernel-based Signal Localization Method for NIRS Brain-computer Interfaces,
ICPR06(I: 1158-1161).
WWW Version. 0609 BibRef

Vansteenkiste, E.[Ewout], Vandemeulebroucke, J.[Jef], Philips, W.[Wilfried],
2D/3D Registration of Neonatal Brain Images,
WBIR06(272-279).
WWW Version. 0607 BibRef

d'Agostino, E., Maes, F., Vandermeulen, D., Suetens, P.,
A Unified Framework for Atlas Based Brain Image Segmentation and Registration,
WBIR06(136-143).
WWW Version. 0607 BibRef

Rao, A.[Anil], Babalola, K.[Kola], Rueckert, D.[Daniel],
Canonical Correlation Analysis of Sub-cortical Brain Structures Using Non-rigid Registration,
WBIR06(66-74).
WWW Version. 0607 BibRef

Patenaude, B.[Brian], Smith, S.[Stephen], Jenkinson, M.[Mark],
A Bayesian Cost Function Applied to Model-Based Registration of Sub-cortical Brain Structures,
WBIR06(9-17).
WWW Version. 0607 BibRef

Chen, T.[Terrence], Huang, T.S.[Thomas S.],
Scale-Driven Iterative Optimization for Brain Extraction and Registration,
CVPR06(II: 2467-2474).
IEEE DOI may work or IEEE-CS DOI may work. 0606 BibRef

Lui, L.M.[Lok Ming], Wang, Y.[Yalin], Chan, T.F.[Tony F.], Thompson, P.M.[Paul M.],
Automatic Landmark Tracking and its Application to the Optimization of Brain Conformal Mapping,
CVPR06(II: 1784-1792).
IEEE DOI may work or IEEE-CS DOI may work. 0606 BibRef

Ericsson, A.[Anders], Lonsdale, M.N.[Markus Nowak], Astrom, K.[Kalle], Edenbrandt, L.[Lars], Friberg, L.[Lars],
Decision Support System for the Diagnosis of Parkinson's Disease,
SCIA05(740-749).
WWW Version. 0506 BibRef

Bettio, F.[Fabio], Frexia, F.[Francesca], Giachetti, A.[Andrea], Gobbetti, E.[Enrico], Pintore, G.[Gianni], Zanetti, G.[Gianluigi],
3D Functional Models of Monkey Brain Through Elastic Registration of Histological Sections,
CIAP05(1182-1189).
WWW Version. 0509 BibRef

Chen, T.[Terrence], Huang, T.S.[Thomas S.], Yin, W.T.[Wo-Tao], Zhou, X.S.[Xiang Sean],
A New Coarse-to-Fine Framework for 3D Brain MR Image Registration,
CVBIA05(114-124).
WWW Version. 0601 BibRef

Huang, C.H.[Chung-Hsien], Lee, J.D.[Jiann-Der],
Improving MMI with enhanced-FCM for the fusion of brain MR and SPECT images,
ICPR04(III: 562-565).
IEEE DOI may work or IEEE-CS DOI may work. 0409 BibRef

Bentabet, L.[Layachi], Ziou, D.[Djemel],
Neuroanatomy Registration: An Algebraic-Topology Based Approach,
AMDO04(76-85).
WWW Version. 0505 BibRef

Henn, S.[Stefan], Hömke, L.[Lars], Witsch, K.[Kristian],
Lesion Preserving Image Registration with Applications to Human Brains,
DAGM04(496-503).
WWW Version. 0505 BibRef

Han, Y.[Yeji], Park, H.M.[Hyun Mook],
Automatic brain MR image registration based on talairach reference system,
ICIP03(I: 1097-1100).
IEEE Abstract. IEEE Top Reference. 0312 BibRef

Bach Cuadra, M., Cuisenaire, O., Meuli, R., Thiran, J.P.,
Automatic Segmentation of Internal Structures of the Brain in MR Images Using a Tandem of Affine and Non Rigid Registration of an Anatomical Brain Atlas,
ICIP01(III: 1083-1086).
IEEE Abstract. IEEE Top Reference. 0108 BibRef

Solanas, E., Duay, V., Cuisenaire, O., Thiran, J.P.,
Relative Anatomical Location for Statistical Non-parametric Brain Tissue Classification in MR Images,
ICIP01(II: 885-888).
IEEE Abstract. IEEE Top Reference. 0108 BibRef

Kim, B., Frey, K.A., Mukhopadhyay, S., Ross, B.D., Meyer, C.R.,
Co-Registration of MRI and Autoradiography of Rat Brain in Three-Dimensions following Automatic Reconstruction of 2D Data Set,
CVRMed95(XX-YY) BibRef 9500

Chapter on Medical Applications, CAT, MRI, Ultrasound, Heart Models, Brain Models continues in
Functional Magnetic Resonance, fMRI .